Factsheet for Zm00001d013914_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G173400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.52	81.28
TraesCS1B01G191000.1	Wheat	golgi	76.72	79.11
TraesCS1D01G165400.1	Wheat	plastid	75.86	78.22
HORVU1Hr1G045630.3	Barley	plasma membrane	75.0	75.32
KRH38500	Soybean	endoplasmic reticulum	56.47	59.55
KRH09074	Soybean	endoplasmic reticulum	56.47	59.01
AT5G52240.1	Thale cress	endoplasmic reticulum	55.6	58.64
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	53.45	56.88
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	53.02	56.42
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	53.02	56.42
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	60.34	54.26
GSMUA_Achr11P...	Banana	plasma membrane	59.91	52.26
Zm00001d018363_P001	Maize	mitochondrion	21.98	49.04
Zm00001d028955_P001	Maize	endoplasmic reticulum	38.79	45.45
Zm00001d032531_P001	Maize	plasma membrane	74.57	42.3
Zm00001d048140_P001	Maize	extracellular, plasma membrane	12.93	36.14
Zm00001d017380_P001	Maize	plastid	53.45	34.73
Zm00001d048139_P001	Maize	cytosol	7.33	10.06

Protein Annotations

EntrezGene:100282951	MapMan:11.3.2.1.4	Gene3D:3.10.120.10	ProteinID:AQK64805.1	UniProt:B6TD62	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	EMBL:EU962927	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001199
InterPro:IPR036400	PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF64	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI000182CC88	EnsemblPlantsGene:Zm00001d013914	EnsemblPlants:Zm00001d013914_P001	EnsemblPlants:Zm00001d013914_T001	SEG:seg

Description

Membrane steroid-binding protein 1

Coordinates

chr5:+:24677237..24680308

Molecular Weight (calculated)

24568.8 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.314

Length

232 amino acids

Sequence
(BLAST)

001: MAVAELWETL KQSIVAYTGL SPAAFFTAVA VAAALYHVVS GLFAAPPPPP PRPREEPEAE PLPPPVQMGE VSEEELSQYD GSDPKKPLLM AIKGQIYDVT
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE PQDLTGDITG LGPFELDALQ DWEYKFMSKY VKVGTVTKNV TVEDRSSAAS TAPGTSEAAT EAEKAPTTTT
201: TEEKPREVPA EAVKEKEAAA AAAAAGEGAQ EN

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.