Factsheet for Zm00001d032531_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.32	75.78
Zm00001d013914_P001	Maize	extracellular, plasma membrane, plastid	42.3	74.57
Os10t0502600-01	Rice	plasma membrane, plastid	40.34	71.12
KRH38500	Soybean	endoplasmic reticulum	32.52	60.45
KRH09074	Soybean	endoplasmic reticulum	32.76	60.36
AT5G52240.1	Thale cress	endoplasmic reticulum	31.78	59.09
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	36.19	57.36
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	30.56	57.34
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	30.32	56.88
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	30.32	56.88
GSMUA_Achr11P...	Banana	plasma membrane	34.96	53.76
Zm00001d018363_P001	Maize	mitochondrion	12.71	50.0
Zm00001d028955_P001	Maize	endoplasmic reticulum	21.52	44.44
Zm00001d017380_P001	Maize	plastid	33.74	38.66
Zm00001d048140_P001	Maize	extracellular, plasma membrane	6.85	33.73
Zm00001d048139_P001	Maize	cytosol	6.6	15.98

Protein Annotations

EnsemblPlants:Zm00001d032531_P001	EnsemblPlants:Zm00001d032531_T001	EnsemblPlantsGene:Zm00001d032531	EntrezGene:107275240	Gene3D:3.10.120.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199	InterPro:IPR036400
PANTHER:PTHR10281	PANTHER:PTHR10281:SF64	PFAM:PF00173	ProteinID:ONM05288.1	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0008432D48	UniProt:A0A1D6KRE0	MapMan:11.3.2.1.4	:

Description

Membrane steroid-binding protein 1

Coordinates

chr1:+:229758635..229765316

Molecular Weight (calculated)

44014.0 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.317

Length

409 amino acids

Sequence
(BLAST)

001: MAVVELWETL KQAIVAYTGL SPAAFFTAVA VAAALYHVVS GLFAAPPPPP PRPREEPETE PLPPPVQMGE VSEEDLRQYD GSDPKKPLLM AIKGQIYDVT
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE PQDLTGDISG LGPFELDALQ DWEYKFMSKY VKVGTVKKSV PVEGGSTAST TEADKAPTTE EKPSEAVVEE
201: KEAAANEVAE LWSAAKGAPP LAVLAGVAAA VAIYKVGSSL LAPRHPPPRR LEAQTAPPPP VPEPVQVGEI TEEELRQYDG SDPEKPLLMA IKGQIYDVSE
301: SRMFYGPGAA YALFAGKDAS RALAKMSFES QDLNGDISGL TPMELGALND WEYKFATKYA KVGTIRRAAP VEVVYGNISP EMREEVSEPV VEPELEPEPE
401: PEPHDDDAP

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.