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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 3
  • plasma membrane 2
  • extracellular 1
  • vacuole 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH38500 Soybean endoplasmic reticulum 82.43 83.18
KRG91473 Soybean endoplasmic reticulum 71.17 70.22
TraesCS1A01G173400.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 55.41 65.78
KRH35342 Soybean endoplasmic reticulum 69.37 65.53
KRH62716 Soybean mitochondrion 21.62 60.76
CDY61583 Canola endoplasmic reticulum, extracellular, golgi 59.01 60.09
EER91417 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 60.36 60.09
Bra028301.1-P Field mustard endoplasmic reticulum, extracellular, golgi 58.56 59.63
CDY00522 Canola endoplasmic reticulum, extracellular, golgi 58.56 59.63
TraesCS1D01G165400.1 Wheat plastid 59.46 58.67
TraesCS1B01G191000.1 Wheat golgi 59.46 58.67
AT5G52240.1 Thale cress endoplasmic reticulum 58.11 58.64
HORVU1Hr1G045630.3 Barley plasma membrane 59.01 56.71
Zm00001d013914_P001 Maize extracellular, plasma membrane, plastid 59.01 56.47
Os10t0502600-01 Rice plasma membrane, plastid 59.01 56.47
GSMUA_Achr11P... Banana endoplasmic reticulum, nucleus, plastid 60.81 52.33
KRH61642 Soybean cytosol 22.52 50.0
KRH31695 Soybean cytosol 17.57 49.37
GSMUA_Achr5P12190_001 Banana nucleus 56.76 49.22
GSMUA_Achr11P... Banana plasma membrane 58.56 48.87
KRG94134 Soybean endoplasmic reticulum 42.79 47.5
KRH75821 Soybean cytosol, nucleus, plastid 17.12 45.24
KRH52307 Soybean nucleus 22.52 45.05
TraesCS6D01G218900.1 Wheat cytosol, endoplasmic reticulum, plastid 52.25 40.42
TraesCS6B01G264900.1 Wheat cytosol, endoplasmic reticulum, nucleus 51.8 38.59
KRH25811 Soybean mitochondrion 16.22 36.73
HORVU6Hr1G060500.1 Barley cytosol, mitochondrion, nucleus 50.9 35.76
Os02t0640300-01 Rice plasma membrane 53.15 35.44
TraesCS6A01G235900.1 Wheat cytosol 50.0 34.15
Zm00001d017380_P001 Maize plastid 54.5 33.89
Zm00001d032531_P001 Maize plasma membrane 60.36 32.76
EES05839 Sorghum plastid 50.9 31.3
KRG90070 Soybean endoplasmic reticulum 20.72 19.09
KRH17625 Soybean endoplasmic reticulum, golgi, vacuole 20.72 19.09
Protein Annotations
EntrezGene:100807452MapMan:11.3.2.1.4Gene3D:3.10.120.10EMBL:ACUP02010270InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sf
EnsemblPlantsGene:GLYMA_16G194100GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0012505
GO:GO:0016020GO:GO:0016021GO:GO:0020037InterPro:IPR001199InterPro:IPR036400UniProt:K7MIH4
EnsemblPlants:KRH09074ProteinID:KRH09074ProteinID:KRH09074.1PFAM:PF00173PANTHER:PTHR10281PANTHER:PTHR10281:SF45
SMART:SM01117SUPFAM:SSF55856TMHMM:TMhelixUniParc:UPI000233AEF8SEG:seg:
Description
hypothetical protein
Coordinates
chr16:+:35633570..35637343
Molecular Weight (calculated)
24253.3 Da
IEP (calculated)
4.266
GRAVY (calculated)
-0.469
Length
222 amino acids
Sequence
(BLAST)
001: MALQLWETLK EAIEAYTGLS PNTFFTLLAL ILALYYVVSG LFPSSSDHRH NTASRDFEPQ MEPLRPPVQI GEVTEEELKA YDGSDPEKPL LMAIKGQIYD
101: VSQSRMFYGP GGPYALFAGK DASRALAKMS FEEKDLTGDI SGLGPFEVEA LQDWEYKFMG KYVKVGTVKK TVPVTEPEST GEAAESNVHD AESSKPTEDD
201: GPSESAAAKN DGTPSKIDAD KE
Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.