Factsheet for TraesCS6D01G218900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G235900.1	Wheat	cytosol	87.46	77.23
TraesCS6B01G264900.1	Wheat	cytosol, endoplasmic reticulum, nucleus	78.05	75.17
TraesCS1D01G165400.1	Wheat	plastid	43.21	55.11
KRH09074	Soybean	endoplasmic reticulum	40.42	52.25
KRH38500	Soybean	endoplasmic reticulum	38.33	50.0
TraesCS6D01G336900.1	Wheat	cytosol, nucleus, plastid	17.42	49.02
AT5G52240.1	Thale cress	endoplasmic reticulum	36.59	47.73
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	42.86	47.67
GSMUA_Achr11P...	Banana	plasma membrane	43.9	47.37
HORVU6Hr1G060500.1	Barley	cytosol, mitochondrion, nucleus	51.92	47.15
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	35.19	46.33
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	35.19	46.33
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	35.19	46.33
Os02t0640300-01	Rice	plasma membrane	49.48	42.64
TraesCS1D01G165500.1	Wheat	golgi, plastid	35.89	42.21
TraesCS4D01G178900.2	Wheat	endoplasmic reticulum	27.53	40.31
EES05839	Sorghum	plastid	48.08	38.23
Zm00001d017380_P001	Maize	plastid	47.04	37.82
TraesCS4D01G256800.1	Wheat	endoplasmic reticulum	18.47	22.36

Protein Annotations

EnsemblPlants:TraesCS6D01G218900.1	EnsemblPlantsGene:TraesCS6D01G218900	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF45	PFAM:PF00173	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	MapMan:11.3.2.1.4	:	:	:

Description

No Description!

Coordinates

chr6D:-:308922351..308925130

Molecular Weight (calculated)

30765.4 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.325

Length

287 amino acids

Sequence
(BLAST)

001: MAMAAAGEWW EAAKATIAAY TGLPLEAFIT VVAVIAGLYM AVSGSVARPA PSPPRRKGAE DERTLERLLP PVQLGEVTEK ELGLYDGSDP KKPLLIAIKG
101: QIYDVTQSRM FYGPGGPYAL FAGRDASRAL AKMSFELSDL TCDVSGLGPL EVEALQEWEQ KFMGKYVKVG TIKKTILVSD EDGRAHAEIS GIGFDVNVIQ
201: RNHELAPEEN RAETTTAGHV SAMEQPIKIS HVGDSKSIHE DEVEKLEETC GADLRNTSIT GDGGEPKDAG EKAKQAPGVD VNSSRNP

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.