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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • plasma membrane 4
  • mitochondrion 1
  • endoplasmic reticulum 5
  • extracellular 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:cytosol
EpiLoc:plasma membrane
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09074 Soybean endoplasmic reticulum 83.18 82.43
KRG91473 Soybean endoplasmic reticulum 70.45 68.89
KRH35342 Soybean endoplasmic reticulum 70.91 66.38
TraesCS1A01G173400.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 54.55 64.17
KRH62716 Soybean mitochondrion 21.36 59.49
EER91417 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 60.0 59.19
CDY61583 Canola endoplasmic reticulum, extracellular, golgi 58.18 58.72
Bra028301.1-P Field mustard endoplasmic reticulum, extracellular, golgi 57.73 58.26
CDY00522 Canola endoplasmic reticulum, extracellular, golgi 57.73 58.26
AT5G52240.1 Thale cress endoplasmic reticulum 57.27 57.27
Os10t0502600-01 Rice plasma membrane, plastid 60.0 56.9
Zm00001d013914_P001 Maize extracellular, plasma membrane, plastid 59.55 56.47
TraesCS1B01G191000.1 Wheat golgi 57.27 56.0
TraesCS1D01G165400.1 Wheat plastid 57.27 56.0
HORVU1Hr1G045630.3 Barley plasma membrane 57.27 54.55
KRH61642 Soybean cytosol 23.18 51.0
GSMUA_Achr11P... Banana endoplasmic reticulum, nucleus, plastid 59.55 50.78
KRH31695 Soybean cytosol 17.73 49.37
GSMUA_Achr11P... Banana plasma membrane 58.64 48.5
GSMUA_Achr5P12190_001 Banana nucleus 55.0 47.27
KRG94134 Soybean endoplasmic reticulum 42.73 47.0
KRH52307 Soybean nucleus 23.18 45.95
KRH75821 Soybean cytosol, nucleus, plastid 17.27 45.24
TraesCS6D01G218900.1 Wheat cytosol, endoplasmic reticulum, plastid 50.0 38.33
KRH25811 Soybean mitochondrion 16.36 36.73
TraesCS6B01G264900.1 Wheat cytosol, endoplasmic reticulum, nucleus 49.55 36.58
HORVU6Hr1G060500.1 Barley cytosol, mitochondrion, nucleus 51.36 35.76
Os02t0640300-01 Rice plasma membrane 52.27 34.53
TraesCS6A01G235900.1 Wheat cytosol 49.09 33.23
Zm00001d032531_P001 Maize plasma membrane 60.45 32.52
Zm00001d017380_P001 Maize plastid 52.73 32.49
EES05839 Sorghum plastid 50.45 30.75
KRH17625 Soybean endoplasmic reticulum, golgi, vacuole 20.45 18.67
KRG90070 Soybean endoplasmic reticulum 20.45 18.67
Protein Annotations
EntrezGene:100780914MapMan:11.3.2.1.4Gene3D:3.10.120.10EMBL:ACUP02005826InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sf
EnsemblPlantsGene:GLYMA_09G140300GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0012505
GO:GO:0016020GO:GO:0016021GO:GO:0020037UniProt:I1L386InterPro:IPR001199InterPro:IPR036400
EnsemblPlants:KRH38500ProteinID:KRH38500ProteinID:KRH38500.1PFAM:PF00173PANTHER:PTHR10281PANTHER:PTHR10281:SF45
SMART:SM01117SUPFAM:SSF55856TMHMM:TMhelixUniParc:UPI000233876ESEG:seg:
Description
hypothetical protein
Coordinates
chr9:+:34777642..34781506
Molecular Weight (calculated)
24086.2 Da
IEP (calculated)
4.208
GRAVY (calculated)
-0.463
Length
220 amino acids
Sequence
(BLAST)
001: MALQLWETLK EAIVAYTGLS PPTFFTLLAL ILALYYVVSG LFPSSDHRHN TASRDLEPQM EPLRPPVQIG EVTEDDLKAY DGTDPEKPLL MAIKGQIYDV
101: SQSRMFYGPG GPYALFAGKD ASRALAKMSF EEKDLTGDIS GLGPFELEAL QDWEYKFMGK YVKVGTVTKT VPVTEPESTA EPSESTPHDE SSKPTEDDGP
201: SESAAAKNDE TPSKVDADKE
Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.