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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • nucleus 2
  • plasma membrane 4
  • mitochondrion 1
  • cytosol 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plasma membrane
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:nucleus
 plasma membrane: 18557835
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G173400.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 66.81 82.89
TraesCS1B01G191000.1 Wheat golgi 79.74 82.22
TraesCS1D01G165400.1 Wheat plastid 79.31 81.78
HORVU1Hr1G045630.3 Barley plasma membrane 79.74 80.09
EER91417 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 74.57 77.58
KRH38500 Soybean endoplasmic reticulum 56.9 60.0
KRH09074 Soybean endoplasmic reticulum 56.47 59.01
CDY61583 Canola endoplasmic reticulum, extracellular, golgi 54.31 57.8
AT5G52240.1 Thale cress endoplasmic reticulum 54.74 57.73
Bra028301.1-P Field mustard endoplasmic reticulum, extracellular, golgi 53.88 57.34
CDY00522 Canola endoplasmic reticulum, extracellular, golgi 53.88 57.34
GSMUA_Achr11P... Banana endoplasmic reticulum, nucleus, plastid 62.5 56.2
GSMUA_Achr11P... Banana plasma membrane 61.64 53.76
Os02t0793700-02 Rice extracellular 22.84 51.96
Os03t0321000-01 Rice endoplasmic reticulum 38.36 46.6
Os10t0502500-04 Rice plastid 47.84 41.89
Os02t0640300-01 Rice plasma membrane 58.19 40.54
Zm00001d032531_P001 Maize plasma membrane 71.12 40.34
Os03t0205500-01 Rice endoplasmic reticulum 21.98 21.52
Protein Annotations
MapMan:11.3.2.1.4Gene3D:3.10.120.10EntrezGene:4349046ProteinID:AAG13629.1ProteinID:ABB47845.2EMBL:AK069511
EMBL:AK105774ProteinID:BAF26907.1ProteinID:BAT11541.1InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sfProteinID:EAZ16597.1
GO:GO:0003674GO:GO:0005488GO:GO:0005496GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0008289GO:GO:0012505GO:GO:0016020GO:GO:0016021GO:GO:0020037InterPro:IPR001199
InterPro:IPR036400EnsemblPlantsGene:Os10g0502600EnsemblPlants:Os10t0502600-01PFAM:PF00173PANTHER:PTHR10281PANTHER:PTHR10281:SF64
UniProt:Q9FVZ7SMART:SM01117SUPFAM:SSF55856TMHMM:TMhelixUniParc:UPI00000A617CRefSeq:XP_015614354.1
SEG:seg:::::
Description
MEMBRANE STEROID BINDING PROTEIN 2Cytochrome b5 domain containing protein. (Os10t0502600-01);Similar to Membrane steroid-binding protein 1 (Fragment). (Os10t0502600-02);Cytochrome b5 domain containing protein. (Os10t0502600-03)
Coordinates
chr10:-:19171760..19174055
Molecular Weight (calculated)
24635.9 Da
IEP (calculated)
4.234
GRAVY (calculated)
-0.378
Length
232 amino acids
Sequence
(BLAST)
001: MAAAVAELWE TLKQAIVAYT GLSPAAFFTA VAAAAALYHV VSGIFAGPPP PPPPRPRDEP EAEPLPPPVQ LGEVSEEELR QYDGSDPKKP LLMAIKGQIY
101: DVTQSRMFYG PGGPYALFAG KDASRALAKM SFEPQDLTGD ISGLGPFELD ALQDWEYKFM GKYVKVGTVK KTVPVEDGAP STSPETTETA AAAEPEKAPA
201: TEEKPREVSS EEVKEKEDAV AAAAPDEGAK ES
Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.