Factsheet for HORVU1Hr1G045630.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	secretory
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G191000.1	Wheat	golgi	88.31	90.67
TraesCS1A01G173400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.16	90.37
TraesCS1D01G165400.1	Wheat	plastid	87.88	90.22
Os10t0502600-01	Rice	plasma membrane, plastid	80.09	79.74
Zm00001d013914_P001	Maize	extracellular, plasma membrane, plastid	75.32	75.0
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.29	74.89
KRH09074	Soybean	endoplasmic reticulum	56.71	59.01
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	55.41	58.72
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	54.98	58.26
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	54.98	58.26
AT5G52240.1	Thale cress	endoplasmic reticulum	55.41	58.18
KRH38500	Soybean	endoplasmic reticulum	54.55	57.27
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	62.77	56.2
GSMUA_Achr11P...	Banana	plasma membrane	58.87	51.13
HORVU6Hr1G084640.1	Barley	cytosol, nucleus, plastid	22.51	50.98
HORVU4Hr1G052100.3	Barley	endoplasmic reticulum	38.1	43.14
HORVU1Hr1G045610.5	Barley	plastid	47.62	38.46
HORVU6Hr1G060500.1	Barley	cytosol, mitochondrion, nucleus	51.52	37.66
HORVU4Hr1G069740.2	Barley	golgi, mitochondrion, peroxisome, plastid	23.38	16.12

Protein Annotations

EnsemblPlants:HORVU1Hr1G045630.3	EnsemblPlantsGene:HORVU1Hr1G045630	Gene3D:3.10.120.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199	InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF64
PFAM:PF00173	SEG:seg	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000B475BF7
UniProt:A0A287FDN0	MapMan:11.3.2.1.4	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:331597982..331600163

Molecular Weight (calculated)

24948.4 Da

IEP (calculated)

4.356

GRAVY (calculated)

-0.319

Length

231 amino acids

Sequence
(BLAST)

001: AAMAVAELWE TLKQAILAYT GLSPTAFFTA VAVAAALYHV VSGIFAPPPP PRQRPREEPE AEPLPPPVQL GEVDEEELRQ YDGSDPKKPL LMAIKGQIYD
101: VTQSRMFYGP GGPYALFAGK DASRALAKMS FEPQDLNGDT SGLGPFELDA LQDWEYKFMS KYVKVGTVKK AFLGEEGTIS TSPETATAEA ETEKAPAAEH
201: KPREVSSEEV KEKEAAADAA SSVPECWILL G

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.