Factsheet for TraesCS3B01G299500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G173400.1
TraesCS1B01G191000.1
TraesCS1D01G165400.1
TraesCS6A01G235900.1
TraesCS6B01G264900.1
TraesCS6D01G218900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	TraesCS1A01G173400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1B01G191000.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1D01G165400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6A01G235900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6B01G264900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6D01G218900.1	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G266300.2	Wheat	nucleus	99.8	98.59
TraesCS3A01G266200.2	Wheat	nucleus	99.59	98.39
HORVU3Hr1G063220.1	Barley	plasma membrane	96.34	96.34
TraesCS7B01G226000.1	Wheat	cytosol	86.99	93.86
EES01272	Sorghum	nucleus	87.8	85.71
EES10918	Sorghum	nucleus	87.6	85.52
Zm00001d043843_P001	Maize	plasma membrane	86.79	84.72
Os03t0717600-01	Rice	nucleus	87.2	84.62
VIT_16s0098g00320.t01	Wine grape	nucleus	73.17	70.73
GSMUA_AchrUn_...	Banana	nucleus	71.75	69.63
PGSC0003DMT400023451	Potato	nucleus	71.14	68.76
Solyc03g083430.2.1	Tomato	nucleus	70.94	68.57
AT5G06160.1	Thale cress	nucleus	65.24	63.69
CDY14090	Canola	nucleus	64.63	62.85
CDY04981	Canola	nucleus	64.23	62.45
Bra028740.1-P	Field mustard	nucleus	64.23	62.45
Zm00001d019339_P001	Maize	cytosol	13.01	62.14
KRH53478	Soybean	nucleus	62.8	60.71
KRH64470	Soybean	nucleus	62.8	60.71
CDY11356	Canola	nucleus	60.57	58.2
Bra005882.1-P	Field mustard	nucleus	60.37	58.01
CDX80990	Canola	nucleus	59.96	57.84
GSMUA_Achr4P08530_001	Banana	cytosol	5.89	51.79
CDY52753	Canola	mitochondrion	21.14	50.73
CDY07585	Canola	nucleus	24.59	48.59
Bra003140.1-P	Field mustard	cytosol	23.37	47.72
GSMUA_Achr4P16730_001	Banana	extracellular	8.74	41.75

Protein Annotations

MapMan:16.4.1.2.3.3	ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
InterPro:IPR000690	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837
PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd
EnsemblPlantsGene:TraesCS3B01G299500	EnsemblPlants:TraesCS3B01G299500.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:480372526..480380070

Molecular Weight (calculated)

58058.3 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.875

Length

492 amino acids

Sequence
(BLAST)

001: MASSVLEATR AAHEDLERLE RLAVRELQRD PANARDRLFQ SHRVRHMLDL VVSTSDKLVE IYEDKDGARK DEISTHLTAP VQSDIFPKYY ERLKEIRDYH
101: RRNHSARFVS ETDDYEELLK EEPAIEFTGE EAFGRYLDLH ELYNEFINSK FGSLMEYSAY VGTFAQTEKI AHNLKATRPY KEYLEHILEY LMSFLYRTEP
201: LQDIEKIFTK LESEFEEQWT NGEVPGWENK GTEKESVLQE SAVDLDYYST VEELVELGPE KLKEALTARG LKGGGTVQQR AERLFLLKHT PLEKLDRKHF
301: AKGDDLKKEI ALIEMKMKRL CEILDEVIVR TKENAEKKLT LTYEEMEAER EEEEVQADSE SDDEDQQIYN PLKLPMGWDG KPIPYWLYKL HGLGQEFKCE
401: ICGNHSYWGR RAYERHFKEW RHQHGMRCLG IPNTKNFNEI TSIKEATALW ERIQAKQGQN KWRPDLEEEY EDKDGNIYNK KTYTDLQRQG LI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.