Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013914_P001 | |
| Zm00001d017380_P001 | |
| Zm00001d032531_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06160.1 | Zm00001d013914_P001 | AT5G52240.1 | 21798944 |
| AT5G06160.1 | Zm00001d017380_P001 | AT5G52240.1 | 21798944 |
| AT5G06160.1 | Zm00001d032531_P001 | AT5G52240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08530_001 | Banana | cytosol | 21.36 | 39.29 |
| Bra003140.1-P | Field mustard | cytosol | 33.01 | 14.11 |
| CDY07585 | Canola | nucleus | 33.98 | 14.06 |
| EES10918 | Sorghum | nucleus | 66.02 | 13.49 |
| Zm00001d043843_P001 | Maize | plasma membrane | 65.05 | 13.29 |
| HORVU3Hr1G063220.1 | Barley | plasma membrane | 63.11 | 13.21 |
| TraesCS7B01G226000.1 | Wheat | cytosol | 58.25 | 13.16 |
| TraesCS3B01G299500.1 | Wheat | nucleus | 62.14 | 13.01 |
| TraesCS3D01G266300.2 | Wheat | nucleus | 62.14 | 12.85 |
| TraesCS3A01G266200.2 | Wheat | nucleus | 62.14 | 12.85 |
| Os03t0717600-01 | Rice | nucleus | 61.16 | 12.43 |
| TraesCS7A01G325300.2 | Wheat | cytosol | 59.22 | 12.1 |
| TraesCS7D01G321900.1 | Wheat | cytosol | 52.43 | 11.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.34 | 11.24 |
| VIT_16s0098g00320.t01 | Wine grape | nucleus | 49.51 | 10.02 |
| KRH53478 | Soybean | nucleus | 48.54 | 9.82 |
| KRH64470 | Soybean | nucleus | 48.54 | 9.82 |
| CDY52753 | Canola | mitochondrion | 19.42 | 9.76 |
| PGSC0003DMT400023451 | Potato | nucleus | 46.6 | 9.43 |
| Solyc03g083430.2.1 | Tomato | nucleus | 46.6 | 9.43 |
| AT5G06160.1 | Thale cress | nucleus | 45.63 | 9.33 |
| Bra028740.1-P | Field mustard | nucleus | 43.69 | 8.89 |
| CDY14090 | Canola | nucleus | 43.69 | 8.89 |
| CDY04981 | Canola | nucleus | 43.69 | 8.89 |
| CDX80990 | Canola | nucleus | 39.81 | 8.04 |
| CDY11356 | Canola | nucleus | 39.81 | 8.01 |
| Bra005882.1-P | Field mustard | nucleus | 38.84 | 7.81 |
| GSMUA_Achr4P16730_001 | Banana | extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | UniProt:A0A1D6HWZ9 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | ProteinID:ONM52744.1 | PANTHER:PTHR12786 |
| PANTHER:PTHR12786:SF2 | InterPro:SF3A3 | UniParc:UPI000844893C | EnsemblPlantsGene:Zm00001d019339 | EnsemblPlants:Zm00001d019339_P001 | EnsemblPlants:Zm00001d019339_T001 |
| SEG:seg | : | : | : | : | : |
Description
Splicing factor SF3a60 homolog
Coordinates
chr7:-:28579310..28582573
Molecular Weight (calculated)
12211.9 Da
IEP (calculated)
7.042
GRAVY (calculated)
0.020
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTVLEATR VAHEDLERLE RLAARELQWE PDNPRDRFFQ SHRVRHMLDL VVSTSCKLVR PFILFLRVHD SIHLSDSLCL AILGLDTIYI CRLYYERLKE
101: VFI
101: VFI
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.