Factsheet for Os03t0717600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0640300-01
Os10t0502600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	Os02t0640300-01	AT5G52240.1	21798944
AT5G06160.1	Os10t0502600-01	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G063220.1	Barley	plasma membrane	85.21	87.8
TraesCS3B01G299500.1	Wheat	nucleus	84.62	87.2
TraesCS3D01G266300.2	Wheat	nucleus	84.81	86.35
TraesCS7B01G226000.1	Wheat	cytosol	77.51	86.18
TraesCS3A01G266200.2	Wheat	nucleus	84.62	86.14
EES10918	Sorghum	nucleus	84.62	85.12
EES01272	Sorghum	nucleus	84.42	84.92
TraesCS7A01G325300.2	Wheat	cytosol	83.63	84.13
Zm00001d043843_P001	Maize	plasma membrane	83.23	83.73
GSMUA_AchrUn_...	Banana	nucleus	73.57	73.57
TraesCS7D01G321900.1	Wheat	cytosol	66.27	72.73
VIT_16s0098g00320.t01	Wine grape	nucleus	72.98	72.69
PGSC0003DMT400023451	Potato	nucleus	71.2	70.92
Solyc03g083430.2.1	Tomato	nucleus	71.01	70.73
AT5G06160.1	Thale cress	nucleus	65.09	65.48
CDY14090	Canola	nucleus	64.1	64.23
Bra028740.1-P	Field mustard	nucleus	64.1	64.23
CDY04981	Canola	nucleus	64.1	64.23
KRH64470	Soybean	nucleus	62.52	62.28
KRH53478	Soybean	nucleus	62.52	62.28
Zm00001d019339_P001	Maize	cytosol	12.43	61.16
CDY11356	Canola	nucleus	60.35	59.77
CDX80990	Canola	nucleus	59.96	59.61
Bra005882.1-P	Field mustard	nucleus	60.16	59.57
GSMUA_Achr4P08530_001	Banana	cytosol	5.92	53.57
CDY52753	Canola	mitochondrion	21.1	52.2
CDY07585	Canola	nucleus	24.46	49.8
Bra003140.1-P	Field mustard	cytosol	22.88	48.13
GSMUA_Achr4P16730_001	Banana	extracellular	9.47	46.6

Protein Annotations

MapMan:16.4.1.2.3.3	EntrezGene:4333915	ProteinID:ABF98561.1	ProteinID:BAF12996.1	ProteinID:BAS86087.1	ncoils:Coil
InterPro:DUF3449	ProteinID:EAZ28378.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	InterPro:IPR000690
InterPro:Matrin/U1-C_Znf_C2H2	EnsemblPlantsGene:Os03g0717600	EnsemblPlants:Os03t0717600-01	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297
PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	UniProt:Q10DW3	InterPro:SF3A3
InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	UniParc:UPI000000272D	RefSeq:XP_015633103.1	SEG:seg	:

Description

Zinc finger, C2H2-type matrin domain containing protein. (Os03t0717600-01)

Coordinates

chr3:-:29039345..29045538

Molecular Weight (calculated)

59844.2 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.907

Length

507 amino acids

Sequence
(BLAST)

001: MASTVLEATR AKHEDMERLE RLAVRELQRE PANARDRLYQ SHRVRHMLDL VISTSGKLVE IYEDKDNARK DEISNHLSST VQAEIFPKFY DRLKEIRDYH
101: RRNPSARFVS ATDDFEELLK EEPAIEFTGE EAFGRYLDLH ELYNEFINSK FGTPMEYSAY VGTFSHVEKM AQNLKTSRQY REYLEHILEY LTSFLYHTEP
201: LQDIEKIFAK LESEFEEQWI NGEVPGWESK DPEKESAQES VIDLDYYTTV EELVELGPEK LKEALAARGL KSGGTVQQRA ERLFLLKHTP LEQLDRKHFA
301: KGSHSSVSNA TSNGNNFKDN LKKEIALMEV KMRRLCELLD EIIVRTKENA EKKLTLTYEE MEAEREEEEV QADSESDDED QQIYNPLKLP MGWDGKPIPY
401: WLYKLHGLGQ EFKCEICGNH SYWGRRAYER HFKEWRHQHG MRCLGIPNTK NFNEITSIQE AKELWEKIQQ RQGLNKWRPD LEEEYEDQEG NIYNKKTYTD
501: LQRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.