Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028740.1-P | Field mustard | nucleus | 83.33 | 83.0 |
| CDY04981 | Canola | nucleus | 83.13 | 82.81 |
| CDY14090 | Canola | nucleus | 82.94 | 82.61 |
| CDY11356 | Canola | nucleus | 79.37 | 78.12 |
| Bra005882.1-P | Field mustard | nucleus | 79.17 | 77.93 |
| CDX80990 | Canola | nucleus | 78.37 | 77.45 |
| VIT_16s0098g00320.t01 | Wine grape | nucleus | 74.6 | 73.87 |
| PGSC0003DMT400023451 | Potato | nucleus | 74.21 | 73.48 |
| Solyc03g083430.2.1 | Tomato | nucleus | 74.01 | 73.28 |
| HORVU3Hr1G063220.1 | Barley | plasma membrane | 64.09 | 65.65 |
| TraesCS3B01G299500.1 | Wheat | nucleus | 63.69 | 65.24 |
| TraesCS7B01G226000.1 | Wheat | cytosol | 58.93 | 65.13 |
| Os03t0717600-01 | Rice | nucleus | 65.48 | 65.09 |
| EES01272 | Sorghum | nucleus | 64.68 | 64.68 |
| TraesCS3A01G266200.2 | Wheat | nucleus | 63.89 | 64.66 |
| Zm00001d043843_P001 | Maize | plasma membrane | 64.48 | 64.48 |
| TraesCS3D01G266300.2 | Wheat | nucleus | 63.69 | 64.46 |
| KRH64470 | Soybean | nucleus | 64.68 | 64.05 |
| EES10918 | Sorghum | nucleus | 63.89 | 63.89 |
| TraesCS7A01G325300.2 | Wheat | cytosol | 63.69 | 63.69 |
| KRH53478 | Soybean | nucleus | 64.29 | 63.65 |
| GSMUA_Achr4P16740_001 | Banana | cytosol | 6.15 | 63.27 |
| CDY52753 | Canola | mitochondrion | 25.2 | 61.95 |
| CDY07585 | Canola | nucleus | 30.16 | 61.04 |
| Bra003140.1-P | Field mustard | cytosol | 28.57 | 59.75 |
| TraesCS7D01G321900.1 | Wheat | cytosol | 47.62 | 51.95 |
| Zm00001d019339_P001 | Maize | cytosol | 9.33 | 45.63 |
Protein Annotations
| MapMan:16.4.1.2.3.3 | EntrezGene:830503 | UniProt:A0A178UIC7 | ProteinID:AED90977.1 | ArrayExpress:AT5G06160 | EnsemblPlantsGene:AT5G06160 |
| RefSeq:AT5G06160 | TAIR:AT5G06160 | RefSeq:AT5G06160-TAIR-G | EnsemblPlants:AT5G06160.1 | TAIR:AT5G06160.1 | Symbol:ATO |
| EMBL:AY039944 | EMBL:AY113862 | ProteinID:BAB09681.1 | ncoils:Coil | InterPro:DUF3449 | GO:GO:0000003 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045694 | GO:GO:0046872 |
| InterPro:IPR000690 | InterPro:Matrin/U1-C_Znf_C2H2 | RefSeq:NP_196234.3 | ProteinID:OAO92812.1 | PFAM:PF11931 | PFAM:PF12108 |
| PFAM:PF13297 | PFAM:PF16837 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50171 | PANTHER:PTHR12786 |
| PANTHER:PTHR12786:SF2 | UniProt:Q9FG01 | InterPro:SF3A3 | InterPro:SF3A3_dom | InterPro:SF3a60_bindingd | UniParc:UPI00000A802F |
| SEG:seg | : | : | : | : | : |
Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
Coordinates
chr5:-:1862325..1866433
Molecular Weight (calculated)
58975.3 Da
IEP (calculated)
4.968
GRAVY (calculated)
-0.898
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.