Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr5P12190_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06160.1 | GSMUA_Achr11P... | AT5G52240.1 | 21798944 |
| AT5G06160.1 | GSMUA_Achr11P... | AT5G52240.1 | 21798944 |
| AT5G06160.1 | GSMUA_Achr5P12190_001 | AT5G52240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 75.51 | 7.3 |
| VIT_16s0098g00320.t01 | Wine grape | nucleus | 67.35 | 6.48 |
| Solyc03g083430.2.1 | Tomato | nucleus | 65.31 | 6.29 |
| PGSC0003DMT400023451 | Potato | nucleus | 65.31 | 6.29 |
| AT5G06160.1 | Thale cress | nucleus | 63.27 | 6.15 |
| CDY14090 | Canola | nucleus | 63.27 | 6.13 |
| CDY04981 | Canola | nucleus | 63.27 | 6.13 |
| Bra028740.1-P | Field mustard | nucleus | 63.27 | 6.13 |
| CDX80990 | Canola | nucleus | 57.14 | 5.49 |
| CDY11356 | Canola | nucleus | 57.14 | 5.47 |
| Bra005882.1-P | Field mustard | nucleus | 57.14 | 5.47 |
| GSMUA_Achr4P08530_001 | Banana | cytosol | 4.08 | 3.57 |
| GSMUA_Achr4P16730_001 | Banana | extracellular | 4.08 | 1.94 |
| Bra003140.1-P | Field mustard | cytosol | 4.08 | 0.83 |
| CDY07585 | Canola | nucleus | 4.08 | 0.8 |
| GSMUA_Achr4P16760_001 | Banana | cytosol | 2.04 | 0.7 |
| CDY52753 | Canola | mitochondrion | 2.04 | 0.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P16740_001 | EnsemblPlants:GSMUA_Achr4T16740_001 | EnsemblPlantsGene:GSMUA_Achr4G16740_001 | PFAM:PF13297 | UniParc:UPI00029663D2 | UniProt:M0SPI8 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Splicing factor 3A subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16740_001]
Coordinates
chr4:-:15312323..15315086
Molecular Weight (calculated)
5384.4 Da
IEP (calculated)
3.633
GRAVY (calculated)
-0.227
Length
49 amino acids
Sequence
(BLAST)
(BLAST)
1: MENSLIQSQE AVIDLDYCST VEELMEVGPE KLKESLAAWG LQTGGTLQQ
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.