Factsheet for Solyc03g083430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023451	Potato	nucleus	98.62	98.62
VIT_16s0098g00320.t01	Wine grape	nucleus	80.75	80.75
AT5G06160.1	Thale cress	nucleus	73.28	74.01
CDY14090	Canola	nucleus	72.1	72.53
CDY04981	Canola	nucleus	71.71	72.13
Bra028740.1-P	Field mustard	nucleus	71.32	71.74
Os03t0717600-01	Rice	nucleus	70.73	71.01
TraesCS3B01G299500.1	Wheat	nucleus	68.57	70.94
HORVU3Hr1G063220.1	Barley	plasma membrane	68.37	70.73
TraesCS7B01G226000.1	Wheat	cytosol	62.87	70.18
TraesCS3A01G266200.2	Wheat	nucleus	68.57	70.08
EES01272	Sorghum	nucleus	69.35	70.04
TraesCS3D01G266300.2	Wheat	nucleus	68.37	69.88
EES10918	Sorghum	nucleus	69.16	69.84
Zm00001d043843_P001	Maize	plasma membrane	68.96	69.64
TraesCS7A01G325300.2	Wheat	cytosol	68.37	69.05
KRH53478	Soybean	nucleus	67.78	67.78
KRH64470	Soybean	nucleus	67.78	67.78
CDY11356	Canola	nucleus	67.39	66.99
Bra005882.1-P	Field mustard	nucleus	67.39	66.99
CDX80990	Canola	nucleus	66.6	66.47
GSMUA_Achr4P16740_001	Banana	cytosol	6.29	65.31
GSMUA_Achr4P16760_001	Banana	cytosol	18.07	64.79
TraesCS7D01G321900.1	Wheat	cytosol	50.88	56.06
CDY52753	Canola	mitochondrion	22.0	54.63
CDY07585	Canola	nucleus	25.74	52.61
Bra003140.1-P	Field mustard	cytosol	24.16	51.04
Zm00001d019339_P001	Maize	cytosol	9.43	46.6

Protein Annotations

MapMan:16.4.1.2.3.3	InterPro:DUF3449	GO:GO:0000003	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0030154	GO:GO:0045694	InterPro:IPR000690
UniProt:K4BIB9	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837
PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd
EnsemblPlantsGene:Solyc03g083430.2	EnsemblPlants:Solyc03g083430.2.1	UniParc:UPI0002768B0D	SEG:seg	:	:

Description

Splicing factor SF3a60 homolog [Source:Projected from Arabidopsis thaliana (AT5G06160) UniProtKB/Swiss-Prot;Acc:Q9FG01]

Coordinates

chr3:-:53297286..53305605

Molecular Weight (calculated)

59740.0 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.864

Length

509 amino acids

Sequence
(BLAST)

001: MSSTLLEVTR ASHEEVERFE RLIVKDLQTE PATNKDRLHQ SHRVRNMIEQ IIDTTHKLVD IYEDKDGARK DEIAALGGQT ATGTNVFSAF YDRLKEIREY
101: HRRHPAARAI IDTGDEYEQL LKEEPQIEFS GEEGSGRYLD LHELFNEYIN SKFGEPIEYT AYLNVFSEPQ KIPRKAKTTR RYLEYLQKLL EYLVYFFERT
201: EPLQDLDRIF SKVTSEFEEE WTLGKVEGWE NNGQENGSAP ENYTVIDLDY YSTAEELMVV GPEKLKEALG ALGLKTGGTI QQRAERLFLT KNISLEKLDR
301: KHFAKGSWKP EQNSVVATSH VGDVKEIALL EAKIRRLCDL LDETIVRTRE NVEKKQALTY EEMEAEREED DVQAESESDD EDQQIYNPLK LPMGWDGKPI
401: PYWLYKLHGL GQEFKCEICG NHSYWGRRAY ERHFKEWRHQ HGMRCLGIPN TKNFNEITSI EEAKLLWERI QERQGVNKWR PDLEEEYEDQ EGNIYNKKTY
501: TDLQRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.