Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06160.1 | CDY00522 | AT5G52240.1 | 21798944 |
| AT5G06160.1 | CDY61583 | AT5G52240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005882.1-P | Field mustard | nucleus | 98.24 | 98.24 |
| CDX80990 | Canola | nucleus | 91.6 | 91.96 |
| CDY04981 | Canola | nucleus | 85.55 | 86.56 |
| CDY14090 | Canola | nucleus | 84.57 | 85.57 |
| AT5G06160.1 | Thale cress | nucleus | 78.12 | 79.37 |
| VIT_16s0098g00320.t01 | Wine grape | nucleus | 68.16 | 68.57 |
| PGSC0003DMT400023451 | Potato | nucleus | 67.38 | 67.78 |
| Solyc03g083430.2.1 | Tomato | nucleus | 66.99 | 67.39 |
| TraesCS3B01G299500.1 | Wheat | nucleus | 58.2 | 60.57 |
| HORVU3Hr1G063220.1 | Barley | plasma membrane | 58.01 | 60.37 |
| Os03t0717600-01 | Rice | nucleus | 59.77 | 60.35 |
| TraesCS3A01G266200.2 | Wheat | nucleus | 58.4 | 60.04 |
| TraesCS7B01G226000.1 | Wheat | cytosol | 53.32 | 59.87 |
| TraesCS3D01G266300.2 | Wheat | nucleus | 58.2 | 59.84 |
| KRH64470 | Soybean | nucleus | 59.38 | 59.73 |
| KRH53478 | Soybean | nucleus | 58.98 | 59.33 |
| EES01272 | Sorghum | nucleus | 58.4 | 59.33 |
| TraesCS7A01G325300.2 | Wheat | cytosol | 58.4 | 59.33 |
| Zm00001d043843_P001 | Maize | plasma membrane | 58.4 | 59.33 |
| EES10918 | Sorghum | nucleus | 58.2 | 59.13 |
| GSMUA_Achr4P16740_001 | Banana | cytosol | 5.47 | 57.14 |
| CDY52753 | Canola | mitochondrion | 22.66 | 56.59 |
| CDY07585 | Canola | nucleus | 27.15 | 55.82 |
| TraesCS7D01G321900.1 | Wheat | cytosol | 44.14 | 48.92 |
| Zm00001d019339_P001 | Maize | cytosol | 8.01 | 39.81 |
Protein Annotations
| MapMan:16.4.1.2.3.3 | GO:A0A078FDF3 | UniProt:A0A078FDF3 | EnsemblPlants:CDY11356 | ProteinID:CDY11356 | ProteinID:CDY11356.1 |
| ncoils:Coil | InterPro:DUF3449 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00049404001 |
| InterPro:IPR000690 | InterPro:Matrin/U1-C_Znf_C2H2 | PFAM:PF11931 | PFAM:PF12108 | PFAM:PF13297 | PFAM:PF16837 |
| PFscan:PS50171 | PANTHER:PTHR12786 | PANTHER:PTHR12786:SF2 | InterPro:SF3A3 | InterPro:SF3A3_dom | InterPro:SF3a60_bindingd |
| UniParc:UPI0004EE78BC | SEG:seg | : | : | : | : |
Description
BnaA03g01920DBnaA03g01920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDF3]
Coordinates
chrLK032010:-:874597..877658
Molecular Weight (calculated)
59064.1 Da
IEP (calculated)
5.923
GRAVY (calculated)
-0.760
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLLDQIR CNHEEIERLE RLVVQDLQTH PSSSKDRLVQ GHRVRNTIHS IMRTIEKLVE TYEDKDGARD DEIAALGGHT ATGVNVYSAF YDRLKEIREY
101: HRKYPSGPLV DATADYEALL QVKPVISFSG EEGVGRYLDL HDMYNQYINS KFGDRVEYSA YLDVFSHPEK IPCKLKLSRQ YMKYMEALLE YLVNFFQRTE
201: PLQDLDKMLS KVETDFEEQF ADGKVIGWES HGQESKLVPS EHTVIDFGYY TTVDELIGVG PEKLKEALGA LGLKVGGTLQ QRAERLFLIK NTPLEKLDKK
301: HFAKPALKGN QNGDAKAMQG ADSSAKQIAL TEAKVKKLCN LLDETIERTK QNVVKKQAMT YEEMEEERKG EEERAEIESD EEMEEGAFHN PLNLPMGVDG
401: KPIPYWLFKL HGLGQKFKCE ICRNKIYKGR RAFERHFKES QHQDGMRCLG IPNTKNFNEI TSIEEAKELW KRIQERQGVN KWRPEVEEEY EDGDGNVYNK
501: KTYSDLKRQG LI
101: HRKYPSGPLV DATADYEALL QVKPVISFSG EEGVGRYLDL HDMYNQYINS KFGDRVEYSA YLDVFSHPEK IPCKLKLSRQ YMKYMEALLE YLVNFFQRTE
201: PLQDLDKMLS KVETDFEEQF ADGKVIGWES HGQESKLVPS EHTVIDFGYY TTVDELIGVG PEKLKEALGA LGLKVGGTLQ QRAERLFLIK NTPLEKLDKK
301: HFAKPALKGN QNGDAKAMQG ADSSAKQIAL TEAKVKKLCN LLDETIERTK QNVVKKQAMT YEEMEEERKG EEERAEIESD EEMEEGAFHN PLNLPMGVDG
401: KPIPYWLFKL HGLGQKFKCE ICRNKIYKGR RAFERHFKES QHQDGMRCLG IPNTKNFNEI TSIEEAKELW KRIQERQGVN KWRPEVEEEY EDGDGNVYNK
501: KTYSDLKRQG LI
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.