Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06160.1 | CDY00522 | AT5G52240.1 | 21798944 |
| AT5G06160.1 | CDY61583 | AT5G52240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11356 | Canola | nucleus | 91.96 | 91.6 |
| CDY04981 | Canola | nucleus | 85.29 | 85.97 |
| CDY14090 | Canola | nucleus | 84.71 | 85.38 |
| AT5G06160.1 | Thale cress | nucleus | 77.45 | 78.37 |
| VIT_16s0098g00320.t01 | Wine grape | nucleus | 67.84 | 67.98 |
| PGSC0003DMT400023451 | Potato | nucleus | 66.67 | 66.8 |
| Solyc03g083430.2.1 | Tomato | nucleus | 66.47 | 66.6 |
| Os03t0717600-01 | Rice | nucleus | 59.61 | 59.96 |
| TraesCS3B01G299500.1 | Wheat | nucleus | 57.84 | 59.96 |
| HORVU3Hr1G063220.1 | Barley | plasma membrane | 57.65 | 59.76 |
| TraesCS3A01G266200.2 | Wheat | nucleus | 58.04 | 59.44 |
| TraesCS3D01G266300.2 | Wheat | nucleus | 57.84 | 59.24 |
| KRH64470 | Soybean | nucleus | 59.02 | 59.14 |
| TraesCS7B01G226000.1 | Wheat | cytosol | 52.55 | 58.77 |
| KRH53478 | Soybean | nucleus | 58.63 | 58.74 |
| EES01272 | Sorghum | nucleus | 57.84 | 58.53 |
| EES10918 | Sorghum | nucleus | 57.45 | 58.13 |
| TraesCS7A01G325300.2 | Wheat | cytosol | 57.45 | 58.13 |
| Zm00001d043843_P001 | Maize | plasma membrane | 57.45 | 58.13 |
| GSMUA_Achr4P16740_001 | Banana | cytosol | 5.49 | 57.14 |
| CDY52753 | Canola | mitochondrion | 22.75 | 56.59 |
| CDY07585 | Canola | nucleus | 27.25 | 55.82 |
| TraesCS7D01G321900.1 | Wheat | cytosol | 43.73 | 48.27 |
| Zm00001d019339_P001 | Maize | cytosol | 8.04 | 39.81 |
Protein Annotations
| MapMan:16.4.1.2.3.3 | GO:A0A078CVV5 | EnsemblPlants:CDX80990 | ProteinID:CDX80990 | ProteinID:CDX80990.1 | ncoils:Coil |
| InterPro:DUF3449 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00134420001 | InterPro:IPR000690 |
| InterPro:Matrin/U1-C_Znf_C2H2 | PFAM:PF11931 | PFAM:PF12108 | PFAM:PF13297 | PFAM:PF16837 | PFscan:PS50171 |
| PANTHER:PTHR12786 | PANTHER:PTHR12786:SF2 | InterPro:SF3A3 | InterPro:SF3A3_dom | InterPro:SF3a60_bindingd | UniParc:UPI0004EF1389 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g02440D
Coordinates
chrLK031823:-:1161732..1165526
Molecular Weight (calculated)
58965.0 Da
IEP (calculated)
6.425
GRAVY (calculated)
-0.825
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLLDQIR CNHEEIERLE RLVVQDLQTQ PSSSKDRLVQ GHRVRNTIHS IMRTIEKLVE TYEDKDGARE DEIAALGGRT ATGVNVYCAF YDRLKEIREY
101: HRKYPPGPLV DASADYEALL KAKPVISFSG EEGAGRYLDL HDMYNQYINS KFGDRVEYSV YLDVFSHPEK VPRRLKFSRQ YMKYMEALLE YLVNFLHRTE
201: PLQDLDRMLS KVEVDFEEQF ADGKVIGWES HGQESKLVPS EHTVIDLGYY TTADELTGVG PEKLKEALGA LGLKVGGTLQ QRAERLFLTK HSPLEKLDKK
301: HFAKPLHKGR QNGDAKATQE PDSAKQIALT EAKVKKLCNL LDEAIERTKQ NIVKKQAMTY EEMEEERKGE EGRAEIESDE EEEGAFHNPL NLPMGVDGKP
401: IPYWLYKLHG LGQKFECEIC RNKIYKGRRA FERHFKEPQH QDGMRCLGIP NTKNFNEITS IKEAKELWKR IQERQGVNKW KPEVEEEYED GDGNVYNKKT
501: YSDLKRQGLI
101: HRKYPPGPLV DASADYEALL KAKPVISFSG EEGAGRYLDL HDMYNQYINS KFGDRVEYSV YLDVFSHPEK VPRRLKFSRQ YMKYMEALLE YLVNFLHRTE
201: PLQDLDRMLS KVEVDFEEQF ADGKVIGWES HGQESKLVPS EHTVIDLGYY TTADELTGVG PEKLKEALGA LGLKVGGTLQ QRAERLFLTK HSPLEKLDKK
301: HFAKPLHKGR QNGDAKATQE PDSAKQIALT EAKVKKLCNL LDEAIERTKQ NIVKKQAMTY EEMEEERKGE EGRAEIESDE EEEGAFHNPL NLPMGVDGKP
401: IPYWLYKLHG LGQKFECEIC RNKIYKGRRA FERHFKEPQH QDGMRCLGIP NTKNFNEITS IKEAKELWKR IQERQGVNKW KPEVEEEYED GDGNVYNKKT
501: YSDLKRQGLI
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.