CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09074
KRH38500

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	KRH09074	AT5G52240.1	21798944
AT5G06160.1	KRH38500	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53478	Soybean	nucleus	97.25	97.25
VIT_16s0098g00320.t01	Wine grape	nucleus	72.5	72.5
PGSC0003DMT400023451	Potato	nucleus	67.98	67.98
Solyc03g083430.2.1	Tomato	nucleus	67.78	67.78
GSMUA_Achr4P16760_001	Banana	cytosol	18.47	66.2
AT5G06160.1	Thale cress	nucleus	64.05	64.68
CDY14090	Canola	nucleus	64.05	64.43
CDY04981	Canola	nucleus	63.85	64.23
Bra028740.1-P	Field mustard	nucleus	63.65	64.03
TraesCS3B01G299500.1	Wheat	nucleus	60.71	62.8
HORVU3Hr1G063220.1	Barley	plasma membrane	60.51	62.6
Os03t0717600-01	Rice	nucleus	62.28	62.52
TraesCS3D01G266300.2	Wheat	nucleus	60.71	62.05
TraesCS3A01G266200.2	Wheat	nucleus	60.71	62.05
Zm00001d043843_P001	Maize	plasma membrane	61.3	61.9
EES01272	Sorghum	nucleus	61.1	61.71
EES10918	Sorghum	nucleus	60.9	61.51
TraesCS7B01G226000.1	Wheat	cytosol	55.01	61.4
TraesCS7A01G325300.2	Wheat	cytosol	59.53	60.12
CDY11356	Canola	nucleus	59.73	59.38
Bra005882.1-P	Field mustard	nucleus	59.53	59.18
CDX80990	Canola	nucleus	59.14	59.02
CDY52753	Canola	mitochondrion	22.0	54.63
CDY07585	Canola	nucleus	25.93	53.01
Bra003140.1-P	Field mustard	cytosol	24.36	51.45
Zm00001d019339_P001	Maize	cytosol	9.82	48.54
TraesCS7D01G321900.1	Wheat	cytosol	42.63	46.97

Protein Annotations

EntrezGene:100815393	MapMan:16.4.1.2.3.3	EMBL:ACUP02002766	ncoils:Coil	InterPro:DUF3449	EnsemblPlantsGene:GLYMA_04G236800
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	UniProt:I1JYT2	InterPro:IPR000690	EnsemblPlants:KRH64470
ProteinID:KRH64470	ProteinID:KRH64470.1	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297
PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom
InterPro:SF3a60_bindingd	UniParc:UPI0002339F26	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50529339..50536474

Molecular Weight (calculated)

59554.9 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.833

Length

509 amino acids

Sequence
(BLAST)

001: MSSTVLEVTR AAHEEVERLE RLIVKELQND PASNKERLYQ SHRVRNMIDT ITSTTEKLIG IYEDSDNARK DEIAALGGQT ATGINVFSAF YDRLKEIREY
101: HRKHPVARVV DANDDYETLL NEELQIEFSG EEALGRYLDL HELYYQYVNS KFGEPIEYSA YLDVFSDTDK IPRKMKMTRQ YREYLANLLE YLLYFFQRTE
201: PLQDLDRILS KVTTEFEESW AVGKVQGWEN DNQENGHVLA EHATIDLDYY STVEELMEVG PERLKEALAA LGLKTGGTVQ QRAERLFLTK HTPLEKLDKK
301: HFAKGARGVE KNGVAAVSQE DGNSKEIALM EAKMTKLCDL LEETIARTKD NVVKKQALTY EEMEAEREEE ETQEDTESED EEEQIYNPLK LPMGWDGKPI
401: PYWLYKLHGL GQEFKCEICG NYSYWGRRAF ERHFKEWRHQ HGMRCLGIPN TKNFNEITSI EEAKELWKKI QQRQGVNKWR PDLEEEYEDK EGNIYNKKTY
501: TDLQRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.