Factsheet for TraesCS3A01G266200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G173400.1
TraesCS1B01G191000.1
TraesCS1D01G165400.1
TraesCS6A01G235900.1
TraesCS6B01G264900.1
TraesCS6D01G218900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	TraesCS1A01G173400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1B01G191000.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1D01G165400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6A01G235900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6B01G264900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6D01G218900.1	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G299500.1	Wheat	nucleus	98.39	99.59
TraesCS3D01G266300.2	Wheat	nucleus	99.4	99.4
HORVU3Hr1G063220.1	Barley	plasma membrane	94.78	95.94
TraesCS7A01G325300.2	Wheat	cytosol	93.57	92.46
EES01272	Sorghum	nucleus	86.55	85.52
EES10918	Sorghum	nucleus	86.35	85.32
Os03t0717600-01	Rice	nucleus	86.14	84.62
Zm00001d043843_P001	Maize	plasma membrane	85.54	84.52
VIT_16s0098g00320.t01	Wine grape	nucleus	72.29	70.73
GSMUA_AchrUn_...	Banana	nucleus	70.88	69.63
PGSC0003DMT400023451	Potato	nucleus	70.28	68.76
Solyc03g083430.2.1	Tomato	nucleus	70.08	68.57
AT5G06160.1	Thale cress	nucleus	64.66	63.89
CDY14090	Canola	nucleus	64.06	63.04
CDY04981	Canola	nucleus	63.65	62.65
Bra028740.1-P	Field mustard	nucleus	63.65	62.65
Zm00001d019339_P001	Maize	cytosol	12.85	62.14
KRH53478	Soybean	nucleus	62.05	60.71
KRH64470	Soybean	nucleus	62.05	60.71
CDY11356	Canola	nucleus	60.04	58.4
Bra005882.1-P	Field mustard	nucleus	59.84	58.2
CDX80990	Canola	nucleus	59.44	58.04
GSMUA_Achr4P08530_001	Banana	cytosol	5.82	51.79
CDY52753	Canola	mitochondrion	20.88	50.73
CDY07585	Canola	nucleus	24.3	48.59
Bra003140.1-P	Field mustard	cytosol	23.09	47.72
GSMUA_Achr4P16730_001	Banana	extracellular	8.63	41.75

Protein Annotations

MapMan:16.4.1.2.3.3	ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
InterPro:IPR000690	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF13297	PFAM:PF16837	PFscan:PS50171
PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	EnsemblPlantsGene:TraesCS3A01G266200	EnsemblPlants:TraesCS3A01G266200.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:490618418..490627418

Molecular Weight (calculated)

58738.1 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.857

Length

498 amino acids

Sequence
(BLAST)

001: MASSVLEATR AAHEDLERLE RLAVRELQRD PANARDRLFQ SHRVRHMLDL VVSTSDKLVE IYEDKDGARK DEISTHLTAP VQSDIFPKYY ERLKEFVACL
101: QIRDYHRRNH SARFVSETDD YEELLKEEPA IEFTGEEAFG RYLDLHELYN EFINSKFGSL MEYSAYVGTF AQTEKIAHNL KATRPYKEYL EHILEYLMSF
201: LYRTEPLQDI EKIFTKLESE FEEQWTNGEV PGWENKGTEK ESVLQESAVD LDYYSTVEEL VELGPEKLKE ALTARGLKGG GTVQQRAERL FLLKHTPLEK
301: LDRKHFAKGD DLKKEIALTE MKMKRLCEIL DEVIVRTKEN AEKKLTLTYE EMEAEREEEE VQADSESDDE DQQIYNPLKL PMGWDGKPIP YWLYKLHGLG
401: QEFKCEICGN HSYWGRRAYE RHFKEWRHQH GMRCLGIPNT KNFNEITSIK EATTLWERIQ AKQGQNKWRP DLEEEYEDKD GNIYNKKTYT DLQRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.