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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P16760_001 Banana cytosol 21.7 77.46
GSMUA_Achr4P16740_001 Banana cytosol 7.3 75.51
Os03t0717600-01 Rice nucleus 73.57 73.57
EES10918 Sorghum nucleus 71.79 72.22
HORVU3Hr1G063220.1 Barley plasma membrane 70.02 72.15
EES01272 Sorghum nucleus 71.6 72.02
Zm00001d043843_P001 Maize plasma membrane 71.4 71.83
TraesCS3B01G299500.1 Wheat nucleus 69.63 71.75
TraesCS7B01G226000.1 Wheat cytosol 64.3 71.49
TraesCS3A01G266200.2 Wheat nucleus 69.63 70.88
TraesCS3D01G266300.2 Wheat nucleus 69.63 70.88
TraesCS7A01G325300.2 Wheat cytosol 69.82 70.24
GSMUA_Achr4P08530_001 Banana cytosol 7.1 64.29
TraesCS7D01G321900.1 Wheat cytosol 53.06 58.23
Zm00001d019339_P001 Maize cytosol 11.24 55.34
GSMUA_Achr4P16730_001 Banana extracellular 10.65 52.43
Protein Annotations
MapMan:16.4.1.2.3.3ncoils:CoilInterPro:DUF3449GO:GO:0000398GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005681GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009987
EnsemblPlantsGene:GSMUA_AchrUn_randomG21870_001EnsemblPlants:GSMUA_AchrUn_randomP21870_001EnsemblPlants:GSMUA_AchrUn_randomT21870_001InterPro:IPR000690UniProt:M0UB95InterPro:Matrin/U1-C_Znf_C2H2
PFAM:PF11931PFAM:PF12108PFAM:PF13297PFAM:PF16837PFscan:PS50171PANTHER:PTHR12786
PANTHER:PTHR12786:SF2InterPro:SF3A3InterPro:SF3A3_domInterPro:SF3a60_bindingdUniParc:UPI0002948281SEG:seg
Description
Putative Splicing factor 3A subunit 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21870_001]
Coordinates
chrchrUn_random:-:106774857..106786086
Molecular Weight (calculated)
59611.9 Da
IEP (calculated)
4.814
GRAVY (calculated)
-0.873
Length
507 amino acids
Sequence
(BLAST)
001: MSSTLLEVTR SAHEDVERLE RLIVRELQRE PANNRDRLFQ SHRVRHMIDV ITSTTEKLID IYEDKDNARR DEIAALGGQT ASGTTNLFSA FYDRLKEIRD
101: YHRRHPAARV VDATEDNEEL LKEEPHIEFS GEEGFGRYLD MHELYNEYIN SKFGETMEYT AFLDSFSQTQ KVPCNLKLSR QYREYLEHVL EYLISFVERT
201: QPLQDLDRLF AKVGTEFEQL WADGTVLGWE NKGSEDGLIQ SQEAVIDLDY YSSVEELMEV GPEKLKEALA ARGLKTGGTL QQRAERLFLT KYTPLDQLDR
301: KHFTKGSRNT QQNGAAEQMS SKKEIALMEA KLQRICELLK EVIEQTKENV EKKQALTYEE MEAEREEEVI QADTESDDEE QQIYNPLKLP MGWDGKPIPY
401: WLYKLHGLGQ EFKCEICGNQ SYWGRRAFER HFKEWRHQHG MRCLNIPNTK NFNEITSIQE AKELWEKIQE RQGLSKWRPD LEEEYEDREG NIYNKKTFSD
501: LQRQGLI
Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.