Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr4P16760_001 | Banana | cytosol | 21.7 | 77.46 |
GSMUA_Achr4P16740_001 | Banana | cytosol | 7.3 | 75.51 |
Os03t0717600-01 | Rice | nucleus | 73.57 | 73.57 |
EES10918 | Sorghum | nucleus | 71.79 | 72.22 |
HORVU3Hr1G063220.1 | Barley | plasma membrane | 70.02 | 72.15 |
EES01272 | Sorghum | nucleus | 71.6 | 72.02 |
Zm00001d043843_P001 | Maize | plasma membrane | 71.4 | 71.83 |
TraesCS3B01G299500.1 | Wheat | nucleus | 69.63 | 71.75 |
TraesCS7B01G226000.1 | Wheat | cytosol | 64.3 | 71.49 |
TraesCS3A01G266200.2 | Wheat | nucleus | 69.63 | 70.88 |
TraesCS3D01G266300.2 | Wheat | nucleus | 69.63 | 70.88 |
TraesCS7A01G325300.2 | Wheat | cytosol | 69.82 | 70.24 |
GSMUA_Achr4P08530_001 | Banana | cytosol | 7.1 | 64.29 |
TraesCS7D01G321900.1 | Wheat | cytosol | 53.06 | 58.23 |
Zm00001d019339_P001 | Maize | cytosol | 11.24 | 55.34 |
GSMUA_Achr4P16730_001 | Banana | extracellular | 10.65 | 52.43 |
Protein Annotations
MapMan:16.4.1.2.3.3 | ncoils:Coil | InterPro:DUF3449 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 |
EnsemblPlantsGene:GSMUA_AchrUn_randomG21870_001 | EnsemblPlants:GSMUA_AchrUn_randomP21870_001 | EnsemblPlants:GSMUA_AchrUn_randomT21870_001 | InterPro:IPR000690 | UniProt:M0UB95 | InterPro:Matrin/U1-C_Znf_C2H2 |
PFAM:PF11931 | PFAM:PF12108 | PFAM:PF13297 | PFAM:PF16837 | PFscan:PS50171 | PANTHER:PTHR12786 |
PANTHER:PTHR12786:SF2 | InterPro:SF3A3 | InterPro:SF3A3_dom | InterPro:SF3a60_bindingd | UniParc:UPI0002948281 | SEG:seg |
Description
Putative Splicing factor 3A subunit 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21870_001]
Coordinates
chrchrUn_random:-:106774857..106786086
Molecular Weight (calculated)
59611.9 Da
IEP (calculated)
4.814
GRAVY (calculated)
-0.873
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLLEVTR SAHEDVERLE RLIVRELQRE PANNRDRLFQ SHRVRHMIDV ITSTTEKLID IYEDKDNARR DEIAALGGQT ASGTTNLFSA FYDRLKEIRD
101: YHRRHPAARV VDATEDNEEL LKEEPHIEFS GEEGFGRYLD MHELYNEYIN SKFGETMEYT AFLDSFSQTQ KVPCNLKLSR QYREYLEHVL EYLISFVERT
201: QPLQDLDRLF AKVGTEFEQL WADGTVLGWE NKGSEDGLIQ SQEAVIDLDY YSSVEELMEV GPEKLKEALA ARGLKTGGTL QQRAERLFLT KYTPLDQLDR
301: KHFTKGSRNT QQNGAAEQMS SKKEIALMEA KLQRICELLK EVIEQTKENV EKKQALTYEE MEAEREEEVI QADTESDDEE QQIYNPLKLP MGWDGKPIPY
401: WLYKLHGLGQ EFKCEICGNQ SYWGRRAFER HFKEWRHQHG MRCLNIPNTK NFNEITSIQE AKELWEKIQE RQGLSKWRPD LEEEYEDREG NIYNKKTFSD
501: LQRQGLI
101: YHRRHPAARV VDATEDNEEL LKEEPHIEFS GEEGFGRYLD MHELYNEYIN SKFGETMEYT AFLDSFSQTQ KVPCNLKLSR QYREYLEHVL EYLISFVERT
201: QPLQDLDRLF AKVGTEFEQL WADGTVLGWE NKGSEDGLIQ SQEAVIDLDY YSSVEELMEV GPEKLKEALA ARGLKTGGTL QQRAERLFLT KYTPLDQLDR
301: KHFTKGSRNT QQNGAAEQMS SKKEIALMEA KLQRICELLK EVIEQTKENV EKKQALTYEE MEAEREEEVI QADTESDDEE QQIYNPLKLP MGWDGKPIPY
401: WLYKLHGLGQ EFKCEICGNQ SYWGRRAFER HFKEWRHQHG MRCLNIPNTK NFNEITSIQE AKELWEKIQE RQGLSKWRPD LEEEYEDREG NIYNKKTFSD
501: LQRQGLI
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.