Factsheet for TraesCS7D01G321900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G173400.1
TraesCS1B01G191000.1
TraesCS1D01G165400.1
TraesCS6A01G235900.1
TraesCS6B01G264900.1
TraesCS6D01G218900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	TraesCS1A01G173400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1B01G191000.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1D01G165400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6A01G235900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6B01G264900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6D01G218900.1	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G325300.2	Wheat	cytosol	83.33	76.39
TraesCS7B01G226000.1	Wheat	cytosol	74.46	75.44
TraesCS3D01G266300.2	Wheat	nucleus	80.95	75.1
HORVU3Hr1G063220.1	Barley	plasma membrane	79.65	74.8
EES01272	Sorghum	nucleus	74.24	68.06
EES10918	Sorghum	nucleus	73.38	67.26
Zm00001d043843_P001	Maize	plasma membrane	72.94	66.87
Os03t0717600-01	Rice	nucleus	72.73	66.27
GSMUA_AchrUn_...	Banana	nucleus	58.23	53.06
VIT_16s0098g00320.t01	Wine grape	nucleus	58.44	53.05
Zm00001d019339_P001	Maize	cytosol	11.69	52.43
PGSC0003DMT400023451	Potato	nucleus	56.49	51.28
Solyc03g083430.2.1	Tomato	nucleus	56.06	50.88
CDY14090	Canola	nucleus	52.16	47.63
Bra028740.1-P	Field mustard	nucleus	52.16	47.63
AT5G06160.1	Thale cress	nucleus	51.95	47.62
CDY04981	Canola	nucleus	51.95	47.43
GSMUA_Achr4P08530_001	Banana	cytosol	5.41	44.64
CDY11356	Canola	nucleus	48.92	44.14
Bra005882.1-P	Field mustard	nucleus	48.48	43.75
CDX80990	Canola	nucleus	48.27	43.73
KRH64470	Soybean	nucleus	46.97	42.63
KRH53478	Soybean	nucleus	46.97	42.63
GSMUA_Achr4P16730_001	Banana	extracellular	9.31	41.75
CDY07585	Canola	nucleus	17.32	32.13
CDY52753	Canola	mitochondrion	13.42	30.24
Bra003140.1-P	Field mustard	cytosol	15.58	29.88

Protein Annotations

MapMan:16.4.1.2.3.3	ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	PFAM:PF11931
PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3
InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	EnsemblPlantsGene:TraesCS7D01G321900	EnsemblPlants:TraesCS7D01G321900.1	SEG:seg	:

Description

No Description!

Coordinates

chr7D:-:412154002..412162028

Molecular Weight (calculated)

53561.5 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.680

Length

462 amino acids

Sequence
(BLAST)

001: MASSVLEATR AAHEDLERLD RLVVRELQRD PANARDRLFQ SHRVHHMLDL VISTSDKLVE IYEDKDGARK DEISTHLTAP VQSDIFPKYY ERLKEIRDYH
101: RRNHSARFIS ETDDYEELLK EEPAIEFTGE EAFGRYLDLH ELYNEFINSK FGSLMEYSAY VGTFAQTEKI SHSLKATRQY KEYLEHILEY LTSFMYRTEP
201: LQDIDKIFTK LQSEFEEQWA NGEVPGWENK GTGKKSESQE SAVDLDYYNT VEELVELGPE KLKEALTARA LKGGGTVQQR AKRLFLLKHT PLEQLDRKHF
301: AKGDDLKKEI ALLEVKMKRL CEILDEVIVR TKENAEKKLT LTYEEMEAER EEEEVQADSE SDEEDQQIYN PLKLPMGWDG KPIPYWLYKL HVLVRNSSAR
401: YVVTYVVTTV TGGEGIMSAI SRSGAISMGC DALVFLIPRT STKLHPLRRR KHCGRGYKQS KG

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.