Factsheet for VIT_16s0098g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023451	Potato	nucleus	81.34	81.34
Solyc03g083430.2.1	Tomato	nucleus	80.75	80.75
AT5G06160.1	Thale cress	nucleus	73.87	74.6
HORVU3Hr1G063220.1	Barley	plasma membrane	71.51	73.98
CDY14090	Canola	nucleus	73.48	73.91
TraesCS7B01G226000.1	Wheat	cytosol	65.62	73.25
TraesCS3B01G299500.1	Wheat	nucleus	70.73	73.17
Os03t0717600-01	Rice	nucleus	72.69	72.98
Bra028740.1-P	Field mustard	nucleus	72.5	72.92
CDY04981	Canola	nucleus	72.5	72.92
KRH64470	Soybean	nucleus	72.5	72.5
TraesCS3D01G266300.2	Wheat	nucleus	70.73	72.29
TraesCS3A01G266200.2	Wheat	nucleus	70.73	72.29
EES10918	Sorghum	nucleus	71.32	72.02
Zm00001d043843_P001	Maize	plasma membrane	70.92	71.63
EES01272	Sorghum	nucleus	70.92	71.63
KRH53478	Soybean	nucleus	71.51	71.51
TraesCS7A01G325300.2	Wheat	cytosol	70.73	71.43
GSMUA_Achr4P16760_001	Banana	cytosol	19.06	68.31
CDY11356	Canola	nucleus	68.57	68.16
Bra005882.1-P	Field mustard	nucleus	68.37	67.97
CDX80990	Canola	nucleus	67.98	67.84
GSMUA_Achr4P16740_001	Banana	cytosol	6.48	67.35
TraesCS7D01G321900.1	Wheat	cytosol	53.05	58.44
CDY52753	Canola	mitochondrion	22.59	56.1
CDY07585	Canola	nucleus	26.52	54.22
Bra003140.1-P	Field mustard	cytosol	24.95	52.7
Zm00001d019339_P001	Maize	cytosol	10.02	49.51

Protein Annotations

EntrezGene:100253705	wikigene:100253705	MapMan:16.4.1.2.3.3	ProteinID:CBI23142	ProteinID:CBI23142.3	ncoils:Coil
InterPro:DUF3449	UniProt:E0CVI1	EMBL:FN595247	GO:GO:0000003	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0030154	GO:GO:0045694
InterPro:IPR000690	EntrezGene:LOC100253705	wikigene:LOC100253705	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108
PFAM:PF13297	PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3
InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	TIGR:TC63067	UniParc:UPI0001BE210A	ArrayExpress:VIT_16s0098g00320	EnsemblPlantsGene:VIT_16s0098g00320
EnsemblPlants:VIT_16s0098g00320.t01	RefSeq:XP_002268036	RefSeq:XP_002268036.2	RefSeq:XP_010662981.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:20709342..20727453

Molecular Weight (calculated)

60032.5 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.880

Length

509 amino acids

Sequence
(BLAST)

001: MSSTLLEVTR AGHEEIERLE RLIVKDLQNE PASSKDRLFQ SHRVRNMIDT ITITTEKLID IYEDKDNARK DEIAALGGQT ATGTNVFSAF YDRLKEIREY
101: HRKHQAARVV DANEEYEELL KEELRIEFRG EEAFGRYLDL HELYNEYINS KFGEHIEYSA YVEVFSEPQK IPRKLKLTRQ YREYLENLLE YLIYFFERTE
201: PLQDLDRIFT KLATDFEEQW ANGMVEGWEN ESQENGNVPT QHAAIDLDYY STVEEVMEVG PEMLKEALAA LGLKTGGTVQ QRAERLFLTK HTPLEQLDQK
301: HFAKGSRRSE QNGTPAAPKE ADSSKEIALL EAKLRKICEL LYETIVRTKE NIEKKQALTY EEMEAEREEE EVQADTESDD EEQQIYNPLK LPMGWDGKPI
401: PYWLYKLHGL GQEFKCEICG NHSYWGRRAF ERHFKEWRHQ HGMRCLGIPN TKNFNEITSI KEAKVLWERI QERQGLNKWR PDLEEEYEDK EGNIYNKKTY
501: TDLQRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.