Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G554300.1 | Wheat | nucleus | 95.12 | 90.46 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 98.64 | 89.43 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 96.48 | 87.9 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 96.48 | 86.2 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 88.08 | 83.76 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 91.33 | 83.42 |
| Os01t0639100-01 | Rice | nucleus | 90.79 | 82.92 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 87.8 | 82.86 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 90.79 | 82.31 |
| EES07819 | Sorghum | cytosol | 90.51 | 82.06 |
| KRH12197 | Soybean | nucleus | 87.53 | 79.56 |
| PGSC0003DMT400019783 | Potato | cytosol | 88.08 | 79.46 |
| KRH37217 | Soybean | endoplasmic reticulum | 87.53 | 79.36 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 87.8 | 78.07 |
| CDY24617 | Canola | cytosol | 85.09 | 76.96 |
| Bra022449.1-P | Field mustard | cytosol | 85.09 | 76.96 |
| AT3G19760.1 | Thale cress | cytosol | 85.09 | 76.96 |
| CDY33416 | Canola | cytosol | 85.09 | 76.96 |
| CDY22956 | Canola | cytosol | 84.82 | 76.72 |
| CDY51692 | Canola | cytosol | 84.82 | 76.72 |
| CDX82280 | Canola | cytosol | 84.82 | 76.72 |
| CDY42205 | Canola | cytosol | 84.82 | 76.72 |
| Bra038231.1-P | Field mustard | cytosol | 84.82 | 76.72 |
| Bra032127.1-P | Field mustard | cytosol | 84.82 | 76.72 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 68.83 | 76.28 |
| Zm00001d018542_P006 | Maize | cytosol | 90.79 | 75.62 |
| AT1G51380.1 | Thale cress | cytosol | 69.11 | 65.05 |
| Bra014267.1-P | Field mustard | cytosol | 69.38 | 63.37 |
| CDY58940 | Canola | cytosol | 69.38 | 63.37 |
| CDY03623 | Canola | cytosol | 69.11 | 63.12 |
| CDY22577 | Canola | cytosol | 25.47 | 63.09 |
| TraesCS7A01G419400.1 | Wheat | cytosol | 66.94 | 59.66 |
| TraesCS6A01G116200.1 | Wheat | endoplasmic reticulum, vacuole | 66.94 | 55.88 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 46.61 | 31.27 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 35.5 | 30.05 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 35.23 | 29.95 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 36.86 | 27.15 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 37.4 | 26.39 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 36.59 | 25.71 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 33.06 | 25.52 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 34.96 | 25.39 |
| TraesCS6A01G234000.1 | Wheat | mitochondrion | 26.83 | 16.47 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 45.8 | 13.27 |
Protein Annotations
| MapMan:17.3.1.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2A01G552800 | EnsemblPlants:TraesCS2A01G552800.1 | TIGR:cd00079 |
| TIGR:cd00268 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:758553979..758559790
Molecular Weight (calculated)
41944.0 Da
IEP (calculated)
7.905
GRAVY (calculated)
-0.141
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIREDLLRG IYGYGFEKPS AIQQRAVVPI IAGRDVIAQA QSGTGKTSMV SLSVCQVIDT NIHEVQALIL SPTRELATQT ERVMQAVGNY MSVSVHACVG
101: GKSIGEDIRK LEAGVHVVSG TPGRVCDMIK RRTLRTRAIK LLVLDEADEM LTRGFKDQIY DVYRYLPPEL QVVLISATLP HDILEITSKF MTDPVRILVK
201: RDELTLRGIK QFFVAVEKEE WRFDTLCDLY DTLTITQAVI FCNTKRKVDW LTERMRTNNF TVSAMHGDMP QKERDAIMSE FRSGTTHVLI TTDVWARGLD
301: VQQVSLVINY DLPNNRELYI HRIGRSGRFG RKGVAINFVR KDDIRILRDI EQYYSTQIDE MPMNVADLI
101: GKSIGEDIRK LEAGVHVVSG TPGRVCDMIK RRTLRTRAIK LLVLDEADEM LTRGFKDQIY DVYRYLPPEL QVVLISATLP HDILEITSKF MTDPVRILVK
201: RDELTLRGIK QFFVAVEKEE WRFDTLCDLY DTLTITQAVI FCNTKRKVDW LTERMRTNNF TVSAMHGDMP QKERDAIMSE FRSGTTHVLI TTDVWARGLD
301: VQQVSLVINY DLPNNRELYI HRIGRSGRFG RKGVAINFVR KDDIRILRDI EQYYSTQIDE MPMNVADLI
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
Arabidopsis Description
RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.