Factsheet for Os01t0639100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	99.5	99.5
Zm00001d051840_P003	Maize	extracellular, mitochondrion	94.8	94.1
EES07819	Sorghum	cytosol	94.8	94.1
GSMUA_Achr9P23810_001	Banana	cytosol	88.61	92.27
TraesCS2A01G552800.1	Wheat	cytosol	82.92	90.79
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	86.88	89.77
TraesCS2B01G584200.1	Wheat	mitochondrion	89.85	89.19
TraesCS2D01G554300.1	Wheat	nucleus	85.64	89.18
HORVU6Hr1G094560.1	Barley	cytosol	90.59	88.83
TraesCS6A01G416700.1	Wheat	nucleus	90.59	88.62
TraesCS6D01G401900.1	Wheat	nucleus	90.59	88.62
TraesCS6B01G472700.1	Wheat	nucleus	90.1	88.35
VIT_06s0080g00550.t01	Wine grape	cytosol	90.1	87.71
KRH12197	Soybean	nucleus	87.62	87.19
TraesCS2D01G553400.1	Wheat	cytosol	87.38	87.16
PGSC0003DMT400019783	Potato	cytosol	88.12	87.04
KRH37217	Soybean	endoplasmic reticulum	87.62	86.98
Zm00001d018542_P006	Maize	cytosol	94.31	86.0
AT3G19760.1	Thale cress	cytosol	85.15	84.31
Bra022449.1-P	Field mustard	cytosol	84.9	84.07
CDY33416	Canola	cytosol	84.9	84.07
Bra032127.1-P	Field mustard	cytosol	84.65	83.82
Bra038231.1-P	Field mustard	cytosol	84.65	83.82
CDY22956	Canola	cytosol	84.65	83.82
CDY24617	Canola	cytosol	84.65	83.82
CDY51692	Canola	cytosol	84.65	83.82
CDY42205	Canola	cytosol	84.65	83.82
CDX82280	Canola	cytosol	84.41	83.58
GSMUA_Achr3P27120_001	Banana	cytosol	66.34	80.48
HORVU3Hr1G015500.1	Barley	cytosol	28.71	75.82
HORVU3Hr1G015460.1	Barley	cytosol	28.71	75.82
AT1G51380.1	Thale cress	cytosol	69.8	71.94
CDY58940	Canola	cytosol	71.78	71.78
Bra014267.1-P	Field mustard	cytosol	71.78	71.78
HORVU3Hr1G050890.1	Barley	cytosol	28.71	71.6
CDY03623	Canola	cytosol	71.53	71.53
CDY22577	Canola	cytosol	24.01	65.1
Os06t0701100-02	Rice	extracellular, nucleus, plastid	63.61	62.08
Os02t0146600-01	Rice	plastid	63.37	61.84
Os01t0549700-01	Rice	cytosol, plastid	33.91	31.71
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	33.66	31.48
Os04t0533000-02	Rice	cytosol	35.89	29.12
Os02t0641800-02	Rice	plasma membrane, plastid	36.39	28.94
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	34.41	27.52
Os10t0503700-01	Rice	plasma membrane	34.9	27.06
Os02t0221300-01	Rice	cytosol	42.82	19.64
Os01t0970600-01	Rice	plastid	21.78	18.57
Os03t0219700-01	Rice	plastid	25.74	18.15
Os02t0636300-01	Rice	nucleus	25.74	18.15

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EntrezGene:4326580	EMBL:AK073640	ProteinID:BAD68586.1	ProteinID:BAD68952.1
ProteinID:BAF05587.1	ProteinID:BAS73356.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE55061.1	GO:GO:0000166	GO:GO:0000184
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006412	GO:GO:0006417
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	GO:GO:0051028
GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os01g0639100	EnsemblPlants:Os01t0639100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	UniProt:Q5VNM3
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000457EF9
RefSeq:XP_015621327.1	:	:	:	:	:

Description

initiation factor eIF-4A, RNA helicase 2DEAD box RNA helicase homologous to eukaryotic initiation factor 4AIII (eIF4AIII), Core components of the exon junction complex (EJC), Regulation of plant height, pollen, and seed development (Os01t0639100-01)

Coordinates

chr1:+:25636995..25640474

Molecular Weight (calculated)

45601.4 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.139

Length

404 amino acids

Sequence
(BLAST)

001: MAAATTSRRG PGAMDDENLT FETSPGVEVI SSFDQMGIRD DLLRGIYAYG FEKPSAIQQR AVLPIISGRD VIAQAQSGTG KTSMISLSVC QIVDTAVREV
101: QALILSPTRE LAAQTERVML AIGDFINIQV HACIGGKSIG EDIRKLEHGV HVVSGTPGRV CDMIKRRTLR TRAIKLLILD EADEMLGRGF KDQIYDVYRY
201: LPPELQVCLI SATLPHEILE MTSKFMTDPV RILVKRDELT LEGIKQFFVA VEKEEWKFDT LCDLYDTLTI TQAVIFCNTK RKVDWLTERM RSNNFTVSAM
301: HGDMPQKERD AIMGEFRSGA TRVLITTDVW ARGLDVQQVS LVINYDLPNN RELYIHRIGR SGRFGRKGVA INFVKKEDIR ILRDIEQYYS TQIDEMPMNV
401: ADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.