Factsheet for Os03t0219700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0636300-01	Rice	nucleus	94.24	94.24
OQU85369	Sorghum	mitochondrion, plastid	86.56	86.56
HORVU6Hr1G059910.1	Barley	mitochondrion	84.64	80.7
TraesCS6B01G262800.1	Wheat	mitochondrion	84.64	80.7
TraesCS6A01G234000.1	Wheat	mitochondrion	84.12	80.2
TraesCS6D01G216300.1	Wheat	mitochondrion	74.69	79.55
Zm00001d017345_P002	Maize	plastid	86.56	78.11
GSMUA_Achr1P01890_001	Banana	plastid	60.73	65.78
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	62.65	64.45
AT1G12770.2	Thale cress	mitochondrion, plastid	59.34	61.71
KRH13813	Soybean	nucleus	58.99	60.14
KRH43643	Soybean	nucleus	58.81	59.96
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	56.54	59.12
Solyc08g080550.1.1	Tomato	nucleus	56.37	58.94
Os06t0701100-02	Rice	extracellular, nucleus, plastid	19.55	27.05
Os02t0146600-01	Rice	plastid	19.2	26.57
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	18.15	25.74
Os01t0639100-01	Rice	nucleus	18.15	25.74
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	18.85	25.0
Os01t0970600-01	Rice	plastid	20.59	24.89
Os01t0549700-01	Rice	cytosol, plastid	18.67	24.77
Os04t0533000-02	Rice	cytosol	18.32	21.08
Os02t0641800-02	Rice	plasma membrane, plastid	18.67	21.06
Os10t0503700-01	Rice	plasma membrane	19.02	20.92
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	17.98	20.4
Os02t0221300-01	Rice	cytosol	16.4	10.67

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4332087	ProteinID:ABF94680.1	EMBL:AK071610	ProteinID:BAF11317.1
ProteinID:BAS83004.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EAZ26090.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os03g0219700	EnsemblPlants:Os03t0219700-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	UniProt:Q10PV9	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000DB48E5	RefSeq:XP_015627909.1	:

Description

RNA helicase 47BDEAD-like helicase, N-terminal domain containing protein. (Os03t0219700-01)

Coordinates

chr3:-:6286013..6288421

Molecular Weight (calculated)

62922.4 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.283

Length

573 amino acids

Sequence
(BLAST)

001: MRLTVGQVHR HVLALASSRS CFVLGDNLPL RMLSLPRAVR FHQTAWLGTE TVQDKSASLT LASLEGQNKV EYGKKEKATR IGGPKPSSRA SALKVKPKVS
101: SFNSKPAKST LPKSAVVKKT LKIDESLFSA KSFEELGLPP LLIDRLNKEG LSTPTEVQSA AIPIISQKHD AVIQSYTGSG KTLAYLLPIL SEIGPLKRPT
201: EQDGSDKRSG VEAVIVAPSR ELGMQIVREV EKILGPNDKR LVQQLVGGAN RSRQEEALKK NKPLIVVGTP GRISEISAGG KLHTHGCRFL VLDEVDQLLS
301: FNYREDMHRI LEHVGRKSGT SSRDILGPLA RRSERQTILV SATIPFSVIR AARSWGHDPV LVRAMSVVPL DSITVPRPVL SQTDANPNSP SNSVNQAAVN
401: SLPPSLEHYY CISKAQHKVD TLRRCIHALE AQTVIAFMNN TKPLKDVVFK LEARGMKATE LHGDLGKLAR STVLKKFKDG EFRVLVTNEL SARGLDVPEC
501: DLVINLDLPT DSTHYAHRAG RTGRLGRKGT VVTICEETET FVVRKMRKQL AVPIKPCEFT EGKLLVHNEE DVE

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.