Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g04190.t01 | Wine grape | endoplasmic reticulum, vacuole | 63.7 | 63.02 |
| Solyc08g080550.1.1 | Tomato | nucleus | 61.71 | 62.04 |
| PGSC0003DMT400007864 | Potato | golgi, mitochondrion, plastid | 61.52 | 61.86 |
| Os03t0219700-01 | Rice | plastid | 61.71 | 59.34 |
| KRH13813 | Soybean | nucleus | 60.44 | 59.25 |
| KRH43643 | Soybean | nucleus | 59.89 | 58.72 |
| Os02t0636300-01 | Rice | nucleus | 60.8 | 58.46 |
| OQU85369 | Sorghum | mitochondrion, plastid | 60.25 | 57.94 |
| HORVU6Hr1G059910.1 | Barley | mitochondrion | 58.44 | 53.58 |
| TraesCS6B01G262800.1 | Wheat | mitochondrion | 58.26 | 53.41 |
| TraesCS6A01G234000.1 | Wheat | mitochondrion | 58.26 | 53.41 |
| TraesCS6D01G216300.1 | Wheat | mitochondrion | 51.36 | 52.6 |
| Zm00001d017345_P002 | Maize | plastid | 60.44 | 52.44 |
| GSMUA_Achr1P01890_001 | Banana | plastid | 50.27 | 52.36 |
| AT3G19760.1 | Thale cress | cytosol | 20.51 | 27.7 |
| AT1G54270.1 | Thale cress | cytosol | 20.69 | 27.67 |
| AT3G13920.5 | Thale cress | cytosol | 20.87 | 27.45 |
| AT1G72730.1 | Thale cress | cytosol | 20.33 | 27.05 |
| AT1G51380.1 | Thale cress | cytosol | 19.06 | 26.79 |
| AT5G11170.1 | Thale cress | cytosol | 19.42 | 25.06 |
| AT5G19210.2 | Thale cress | plastid | 21.42 | 25.0 |
| AT3G53110.1 | Thale cress | cytosol | 21.23 | 23.59 |
| AT3G61240.1 | Thale cress | cytosol | 20.69 | 22.89 |
| AT5G11200.2 | Thale cress | cytosol | 19.42 | 22.02 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 20.15 | 21.98 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 20.33 | 21.21 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:837833 | ProteinID:AAF78481.1 | ProteinID:AAF88089.2 | ProteinID:AEE28926.1 |
| EMBL:AK175587 | EMBL:AK175711 | EMBL:AK175751 | EMBL:AK175793 | EMBL:AK176044 | EMBL:AK176194 |
| EMBL:AK226229 | EMBL:AK229878 | EMBL:AK230085 | ProteinID:ANM60164.1 | ArrayExpress:AT1G12770 | EnsemblPlantsGene:AT1G12770 |
| RefSeq:AT1G12770 | TAIR:AT1G12770 | RefSeq:AT1G12770-TAIR-G | EnsemblPlants:AT1G12770.2 | EMBL:AY062618 | EMBL:AY114691 |
| Unigene:At.47876 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009663 | GO:GO:0009987 |
| GO:GO:0010497 | GO:GO:0010501 | GO:GO:0016043 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | Symbol:ISE1 | RefSeq:NP_001322468.1 | RefSeq:NP_172737.2 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF537 | UniProt:Q8W4E1 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI00000A7239 | SEG:seg | : | : | : |
Description
RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
Coordinates
chr1:+:4351019..4353797
Molecular Weight (calculated)
60721.8 Da
IEP (calculated)
9.797
GRAVY (calculated)
-0.236
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.