Factsheet for VIT_02s0025g04190.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 3
plasma membrane 2
golgi 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080550.1.1	Tomato	nucleus	69.3	70.44
KRH13813	Soybean	nucleus	70.2	69.57
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	68.22	69.34
KRH43643	Soybean	nucleus	68.58	67.97
AT1G12770.2	Thale cress	mitochondrion, plastid	63.02	63.7
Os02t0636300-01	Rice	nucleus	64.99	63.18
OQU85369	Sorghum	mitochondrion, plastid	64.45	62.65
Os03t0219700-01	Rice	plastid	64.45	62.65
GSMUA_Achr1P01890_001	Banana	plastid	56.91	59.92
HORVU6Hr1G059910.1	Barley	mitochondrion	62.48	57.9
TraesCS6A01G234000.1	Wheat	mitochondrion	62.48	57.9
TraesCS6B01G262800.1	Wheat	mitochondrion	62.12	57.57
TraesCS6D01G216300.1	Wheat	mitochondrion	54.94	56.88
Zm00001d017345_P002	Maize	plastid	64.45	56.54
VIT_04s0008g00990.t01	Wine grape	cytosol	7.0	31.71
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	22.26	30.02
VIT_11s0016g01920.t01	Wine grape	cytosol	22.26	30.02
VIT_06s0080g00550.t01	Wine grape	cytosol	21.18	28.43
VIT_09s0002g01760.t01	Wine grape	cytosol	22.08	28.21
VIT_00s2262g00010.t01	Wine grape	cytosol	12.03	27.46
VIT_04s0008g00980.t01	Wine grape	cytosol	4.13	27.38
VIT_05s0020g02870.t01	Wine grape	extracellular	22.44	25.72
VIT_09s0002g06660.t01	Wine grape	cytosol	19.21	25.0
VIT_04s0008g05330.t01	Wine grape	cytosol	19.75	24.07
VIT_08s0007g04400.t01	Wine grape	cytosol	21.54	23.39
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	19.75	22.92
VIT_15s0046g03200.t01	Wine grape	cytosol	19.75	22.4
VIT_08s0007g04430.t01	Wine grape	cytosol	12.39	22.19

Protein Annotations

EntrezGene:100252990	wikigene:100252990	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A5AK59	EMBL:AM428625
ProteinID:CAN82264	ProteinID:CAN82264.1	ProteinID:CCB58382	ProteinID:CCB58382.1	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596251
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100252990	wikigene:LOC100252990	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGR:TC64032	UniParc:UPI0001523B18	ArrayExpress:VIT_02s0025g04190	EnsemblPlantsGene:VIT_02s0025g04190
EnsemblPlants:VIT_02s0025g04190.t01	unigene:Vvi.7796	RefSeq:XP_002276531	RefSeq:XP_002276531.1	RefSeq:XP_010661191.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:3724940..3726950

Molecular Weight (calculated)

61026.3 Da

IEP (calculated)

10.219

GRAVY (calculated)

-0.236

Length

557 amino acids

Sequence
(BLAST)

001: MQALASTRLL LLVGDCLPVG KLLHVSRFHG SVRFLSRVDR EHGPLTLASL GFKSEFETTK GNKTKPLHQL NAVPEVSKNK VKAVRSNEMK AVGTKKSIEI
101: EAAPFAAKSF SELGLPPLLI DRLEREGFSV PTDVQSAAIP TILKNHDVVI QSYTGSGKTL AYLLPILSEV GPLKNKPPNA DNTSRNKMEI EAVILAPSRE
201: LGMQIVREVE KLLGPADKKL VQQLVGGANR TRQEEALKKN KPSIVVGTPG RIAEMSASGK LRTHGCRYLV LDEVDELLSF NFREDMHRIL EHVGRRSGAD
301: PHGTKSPLER RTERQTIMVS ATVPFSVIRA ARSWGRDPLL VQAKSVIPLE SLPTGPVNLL GPTSTSSSSS SLQTQAAAEG LPPVLKHYFC VTKLQHKIDT
401: LRRCVHALDA KCVIAFMNHT KRLKDAVFKL EARGMKAAEL HGDLGKLARS TTLKKFKNGE VRVLVTNELS ARGLDVSECD LVVNLDLPTD SIHYAHRAGR
501: TGRLGRKGTV VNICEEPEVF VVKKLQRQLG VPIQACEFTE GKLVATTDEE KTLEAVK

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.