Factsheet for VIT_15s0046g03200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02820.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	VIT_01s0011g02820.t01	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	88.8	90.83
CDY54061	Canola	cytosol	60.29	90.8
Solyc10g017530.2.1	Tomato	nucleus	88.39	88.39
CDY45702	Canola	cytosol	36.86	87.86
Bra008527.1-P	Field mustard	cytosol	58.25	86.67
Solyc01g094350.2.1	Tomato	nucleus	86.97	85.74
CDY51147	Canola	cytosol	85.34	84.48
CDY07205	Canola	cytosol	84.11	84.11
AT4G00660.1	Thale cress	cytosol, mitochondrion	86.15	83.76
CDX91901	Canola	cytosol	85.34	83.63
Bra037351.1-P	Field mustard	cytosol	86.15	82.94
CDX74342	Canola	cytosol	86.15	82.3
Bra000965.1-P	Field mustard	cytosol	85.95	82.26
Bra007587.1-P	Field mustard	cytosol	76.58	79.49
Bra003442.1-P	Field mustard	cytosol	76.58	78.83
CDY58787	Canola	cytosol	76.99	78.42
AT3G61240.1	Thale cress	cytosol	79.02	77.91
CDY48935	Canola	cytosol, plastid	75.36	77.89
CDX71756	Canola	cytosol	75.97	77.87
CDY37067	Canola	cytosol	80.86	77.84
CDY27357	Canola	cytosol, plastid	80.04	77.21
Bra039312.1-P	Field mustard	cytosol	80.86	76.79
GSMUA_Achr11P...	Banana	cytosol	88.19	76.64
AT2G45810.1	Thale cress	cytosol, plastid	80.86	75.19
Solyc05g048850.2.1	Tomato	mitochondrion	77.19	70.58
VIT_04s0008g00990.t01	Wine grape	cytosol	10.39	41.46
VIT_04s0008g00980.t01	Wine grape	cytosol	6.31	36.9
VIT_11s0016g01920.t01	Wine grape	cytosol	30.55	36.32
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	30.14	35.84
VIT_06s0080g00550.t01	Wine grape	cytosol	29.53	34.94
VIT_09s0002g01760.t01	Wine grape	cytosol	30.14	33.95
VIT_09s0002g06660.t01	Wine grape	cytosol	29.53	33.88
VIT_04s0008g05330.t01	Wine grape	cytosol	29.53	31.73
VIT_00s2262g00010.t01	Wine grape	cytosol	14.26	28.69
VIT_08s0007g04400.t01	Wine grape	cytosol	28.11	26.9
VIT_08s0007g04430.t01	Wine grape	cytosol	14.46	22.83
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	22.4	19.75
VIT_05s0020g02870.t01	Wine grape	extracellular	17.92	18.11

Protein Annotations

EntrezGene:100251721	wikigene:100251721	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A5C9D5	EMBL:AM486855
ProteinID:CAN75439	ProteinID:CAN75439.1	ProteinID:CCB62389	ProteinID:CCB62389.1	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596755
GO:GO:0000166	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006417
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010494	GO:GO:0010501
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0033962	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100251721	wikigene:LOC100251721	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGR:TC61415	UniParc:UPI0001522680	ArrayExpress:VIT_15s0046g03200	EnsemblPlantsGene:VIT_15s0046g03200	EnsemblPlants:VIT_15s0046g03200.t01
RefSeq:XP_002270379	RefSeq:XP_002270379.1	RefSeq:XP_010661748.1	RefSeq:XP_010661749.1	RefSeq:XP_019081270.1	SEG:seg

Description

No Description!

Coordinates

chr15:-:19785011..19802401

Molecular Weight (calculated)

55950.4 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.402

Length

491 amino acids

Sequence
(BLAST)

001: MHARGRYPPG IHGGGRGGGM GTGNPSGPNP NFQYRNPNQQ QYVQRNVGQS YQQFQQQNQQ QWLRRNQAGA DSAVDEVEKT VQSEAVDSSS QDWKARLKIP
101: PPDTRYRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGSDILAR AKNGTGKTAA FCIPALEKID QDNNVIQVVI LVPTRELALQ
201: TSQVCKELGK HLKIQVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLS KKGVCILKDC SMLVMDEADK LLSPEFQPSI EQLIHFMPLN RQILLFSATF
301: PVTVKDFKDR YLQKPYIINL MDELTLKGIT QYYAFVEERQ KVHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ DHRNRVFHDF
401: RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKNSETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQAIYC R

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.