Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54061 | Canola | cytosol | 62.67 | 96.32 |
| CDX74342 | Canola | cytosol | 98.6 | 96.11 |
| CDY51147 | Canola | cytosol | 93.01 | 93.95 |
| CDY07205 | Canola | cytosol | 92.02 | 93.89 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 93.41 | 92.67 |
| KRH04755 | Soybean | cytosol | 47.31 | 89.43 |
| CDY45702 | Canola | cytosol | 36.33 | 88.35 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 82.44 | 86.04 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 83.63 | 85.34 |
| Solyc10g017530.2.1 | Tomato | nucleus | 82.83 | 84.52 |
| KRH48170 | Soybean | endoplasmic reticulum | 84.63 | 84.29 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 84.43 | 84.26 |
| KRH48173 | Soybean | mitochondrion | 83.83 | 84.0 |
| KRH65096 | Soybean | nucleus | 83.43 | 83.77 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 81.44 | 82.93 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 80.24 | 82.72 |
| Solyc01g094350.2.1 | Tomato | nucleus | 82.04 | 82.53 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 55.69 | 82.06 |
| Os04t0533000-02 | Rice | cytosol | 80.64 | 81.12 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 79.04 | 80.49 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 81.24 | 80.12 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 79.44 | 79.76 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 79.64 | 79.64 |
| CDY58787 | Canola | cytosol | 76.05 | 79.05 |
| CDX71756 | Canola | cytosol | 75.25 | 78.71 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 79.44 | 78.35 |
| CDY48935 | Canola | cytosol, plastid | 74.25 | 78.32 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 80.64 | 77.99 |
| CDY37067 | Canola | cytosol | 78.84 | 77.45 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 80.84 | 77.44 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 80.64 | 77.25 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 80.64 | 77.25 |
| Zm00001d051268_P004 | Maize | extracellular | 80.24 | 77.01 |
| Zm00001d017384_P008 | Maize | cytosol | 80.24 | 76.57 |
| CDY27357 | Canola | cytosol, plastid | 77.64 | 76.42 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 76.65 | 76.34 |
| KRH40488 | Soybean | cytosol | 81.84 | 76.07 |
| EER91410 | Sorghum | cytosol | 76.65 | 75.74 |
| EER91411 | Sorghum | cytosol | 76.45 | 75.54 |
| Os10t0503700-01 | Rice | plasma membrane | 78.24 | 75.24 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 77.45 | 73.9 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 77.25 | 73.71 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 77.05 | 73.38 |
| GSMUA_Achr11P... | Banana | cytosol | 81.44 | 72.21 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 74.05 | 69.09 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 77.25 | 68.62 |
| CDY26130 | Canola | cytosol | 8.58 | 42.57 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.78 | 42.39 |
| CDY67069 | Canola | cytosol | 7.58 | 37.62 |
| CDY32586 | Canola | cytosol | 28.14 | 37.3 |
| CDY22577 | Canola | cytosol | 10.98 | 36.91 |
| CDY08220 | Canola | cytosol | 30.14 | 36.65 |
| CDY02469 | Canola | cytosol | 30.14 | 36.65 |
| CDY10607 | Canola | cytosol | 29.94 | 36.5 |
| CDY24057 | Canola | cytosol | 29.94 | 36.41 |
| CDY39079 | Canola | cytosol | 29.94 | 36.41 |
| CDY24617 | Canola | cytosol | 29.54 | 36.27 |
| CDY22956 | Canola | cytosol | 29.34 | 36.03 |
| CDX82280 | Canola | cytosol | 29.34 | 36.03 |
| CDY42205 | Canola | cytosol | 29.34 | 36.03 |
| CDY33416 | Canola | cytosol | 29.34 | 36.03 |
| CDY51692 | Canola | cytosol | 29.14 | 35.78 |
| CDY33073 | Canola | cytosol | 29.34 | 35.68 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.94 | 35.13 |
| CDX97528 | Canola | cytosol | 29.74 | 35.06 |
| CDY55205 | Canola | cytosol | 29.54 | 34.99 |
| CDY58940 | Canola | cytosol | 27.94 | 34.65 |
| CDY03623 | Canola | cytosol | 27.74 | 34.41 |
| CDX82505 | Canola | cytosol | 29.34 | 34.35 |
| CDX75739 | Canola | cytosol | 29.34 | 33.72 |
| CDY72259 | Canola | cytosol | 14.77 | 33.33 |
| CDY51112 | Canola | cytosol | 28.94 | 32.95 |
| CDX85725 | Canola | cytosol | 28.94 | 32.81 |
| CDX70383 | Canola | cytosol | 28.94 | 32.44 |
| CDY51111 | Canola | cytosol | 15.57 | 31.33 |
| CDY71952 | Canola | cytosol | 25.35 | 30.46 |
| CDY11154 | Canola | cytosol | 12.18 | 30.2 |
| CDX85726 | Canola | cytosol | 29.14 | 29.8 |
| CDX69778 | Canola | cytosol | 28.94 | 29.29 |
| CDX78412 | Canola | cytosol | 28.94 | 29.18 |
| CDY56825 | Canola | cytosol | 12.97 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 28.94 | 27.72 |
| CDY54037 | Canola | cytosol | 14.37 | 26.97 |
| CDY53867 | Canola | cytosol | 22.16 | 26.3 |
| CDX67556 | Canola | cytosol | 24.75 | 26.27 |
| CDX76225 | Canola | cytosol | 25.75 | 26.01 |
| CDX95397 | Canola | cytosol | 25.55 | 25.91 |
| CDY13319 | Canola | cytosol | 24.75 | 25.31 |
| CDX72939 | Canola | mitochondrion, nucleus | 22.55 | 24.25 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.97 | 23.41 |
| CDY02574 | Canola | plastid | 20.76 | 21.76 |
| CDY47205 | Canola | plastid | 20.36 | 21.34 |
| CDY68148 | Canola | nucleus | 22.75 | 15.43 |
| CDY49860 | Canola | cytosol | 1.6 | 6.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078DRH8 | EnsemblPlants:CDX91901 | ProteinID:CDX91901 | ProteinID:CDX91901.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00153528001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF1B76 | SEG:seg | : | : | : | : |
Description
BnaC03g32030D
Coordinates
chrLK031870:-:688163..691037
Molecular Weight (calculated)
57044.6 Da
IEP (calculated)
8.638
GRAVY (calculated)
-0.394
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNNNNNRGG RYPPGIGAGR GAINPNPNFQ SRPGYQQQPQ YVQRGGYSHQ QQQFQQATSQ PRQYQQQQWL PRPQISSGNT NGGGHAVVEV EKTVLSDTNS
101: EDWKARLKLP APDTHYRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGRDILAR AKNGTGKTAA FCIPVLEKID QDNNVIQAVI
201: IVPTRELALQ TSQVCKELGK HLKIQVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLT KKGVCVLKDC SVLAMDEADK LLSQEFQPSV EHLISFLPQN
301: RQILMFSATF PVTVKYFKDR FLTNPYIINL MDELTLKGIT QFYAFVEERQ KIHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ
401: DHRNRVFHDF RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKNAETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQAIYC
501: Q
101: EDWKARLKLP APDTHYRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGRDILAR AKNGTGKTAA FCIPVLEKID QDNNVIQAVI
201: IVPTRELALQ TSQVCKELGK HLKIQVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLT KKGVCVLKDC SVLAMDEADK LLSQEFQPSV EHLISFLPQN
301: RQILMFSATF PVTVKYFKDR FLTNPYIINL MDELTLKGIT QFYAFVEERQ KIHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ
401: DHRNRVFHDF RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKNAETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQAIYC
501: Q
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.