Factsheet for GSMUA_Achr5P12220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20740_001
GSMUA_Achr2P07060_001
GSMUA_Achr9P00760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	GSMUA_Achr1P20740_001	AT1G26110.1	21798944
AT2G45810.1	GSMUA_Achr2P07060_001	AT1G26110.1	21798944
AT2G45810.1	GSMUA_Achr9P00760_001	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	92.28	92.28
GSMUA_Achr2P10560_001	Banana	cytosol	89.63	90.74
CDY54061	Canola	cytosol	58.54	88.34
Solyc10g017530.2.1	Tomato	nucleus	86.38	86.56
CDY45702	Canola	cytosol	36.18	86.41
Bra008527.1-P	Field mustard	cytosol	56.71	84.55
Solyc01g094350.2.1	Tomato	nucleus	84.76	83.73
CDY51147	Canola	cytosol	80.69	80.04
CDY07205	Canola	cytosol	79.67	79.84
CDX91901	Canola	cytosol	80.49	79.04
Bra037351.1-P	Field mustard	cytosol	81.71	78.82
AT4G00660.1	Thale cress	cytosol, mitochondrion	80.89	78.81
Bra007587.1-P	Field mustard	cytosol	74.59	77.59
CDX74342	Canola	cytosol	80.89	77.43
Bra000965.1-P	Field mustard	cytosol	80.69	77.39
Bra003442.1-P	Field mustard	cytosol	75.0	77.36
GSMUA_Achr11P...	Banana	cytosol	88.41	76.99
CDX71756	Canola	cytosol	74.8	76.83
CDY58787	Canola	cytosol	75.0	76.56
CDY48935	Canola	cytosol, plastid	73.78	76.42
CDY37067	Canola	cytosol	79.06	76.27
CDY27357	Canola	cytosol, plastid	78.25	75.64
AT3G61240.1	Thale cress	cytosol	76.42	75.5
Bra039312.1-P	Field mustard	cytosol	79.06	75.24
KRH40488	Soybean	cytosol	81.91	74.77
AT2G45810.1	Thale cress	cytosol, plastid	79.47	74.05
Solyc05g048850.2.1	Tomato	mitochondrion	75.2	68.9
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	31.71	37.77
GSMUA_Achr8P24670_001	Banana	cytosol	28.46	37.23
GSMUA_Achr2P19480_001	Banana	cytosol	27.85	37.03
GSMUA_AchrUn_...	Banana	cytosol	27.85	37.03
GSMUA_Achr10P...	Banana	cytosol	28.66	36.81
GSMUA_Achr9P23810_001	Banana	cytosol	28.86	36.6
GSMUA_Achr7P19690_001	Banana	cytosol	26.22	36.54
GSMUA_Achr3P27120_001	Banana	cytosol	22.97	33.93
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	15.24	32.75
GSMUA_Achr8P05380_001	Banana	cytosol	30.49	32.4
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	27.64	31.12
GSMUA_Achr9P13950_001	Banana	mitochondrion	18.09	28.99
GSMUA_Achr10P...	Banana	nucleus	27.85	28.42
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	27.85	27.51
GSMUA_Achr6P14220_001	Banana	cytosol	28.25	26.58
GSMUA_Achr6P27990_001	Banana	plastid	18.9	19.18
GSMUA_Achr1P01890_001	Banana	plastid	19.11	17.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G12220_001
EnsemblPlants:GSMUA_Achr5P12220_001	EnsemblPlants:GSMUA_Achr5T12220_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0SXV1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00029491F7	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12220_001]

Coordinates

chr5:+:8806667..8815212

Molecular Weight (calculated)

55897.4 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.405

Length

492 amino acids

Sequence
(BLAST)

001: MNPRGRFPPP GMGNGRGGGA STNPGFYARN PQQHQHQHQQ QYVQRNPGNG QPNRQFQHQH QQWSRRNWVG GDSGAGEVMK SVQSEATDSS LQDWKAQLKI
101: PPADSRYKTE DVTATKGNEF EDYFLKRELL MGIYEKGFER PSPIQEESIP IALTGSDILA RAKNGTGKTA AFCIPALEKI DQDCNAIQVV ILVPTRELAL
201: QTSQVCKELG KHLRIQVMVS TGGTSLKDDI MRLYQPVHLL VGTPGRILDL AKKGVCVLKD CSMLIMDEAD KLLSPEFQPT IEQLIQFLPA NRQILMFSAT
301: FPVTVKDFKD KYLPKPYIIN LMDELTLKGI TQYYAFVEER QKVHCLNTLF SKLQINQSII FCNSVNRVEL LAKKITELGY SCFYIHAKML QDHRNRVFHD
401: FRNGACRNLV CTDLFTRGID IQAVNVVINF DFPKNSETYL HRVGRSGRFG HLGLAINLIT YEDRFNLYRI EQELGAEIKQ IPPQIDRTIY CT

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.