Factsheet for GSMUA_Achr6P01750_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24670_001	Banana	cytosol	86.92	95.48
GSMUA_Achr2P19480_001	Banana	cytosol	84.99	94.86
GSMUA_AchrUn_...	Banana	cytosol	84.99	94.86
VIT_11s0016g01920.t01	Wine grape	cytosol	94.19	94.19
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	94.19	94.19
GSMUA_Achr10P...	Banana	cytosol	87.17	93.99
EES04512	Sorghum	cytosol	93.22	93.9
Os06t0701100-02	Rice	extracellular, nucleus, plastid	93.95	93.72
Os02t0146600-01	Rice	plastid	93.7	93.48
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.46	93.46
KRH12430	Soybean	cytosol	93.46	93.46
Zm00001d036480_P001	Maize	plasma membrane, plastid	93.46	93.24
TraesCS7D01G412200.1	Wheat	golgi, nucleus	93.46	93.24
TraesCS7B01G320000.1	Wheat	cytosol	93.46	93.24
TraesCS7A01G419400.1	Wheat	cytosol	93.46	93.24
Zm00001d014673_P001	Maize	plastid	93.22	93.0
Zm00001d015251_P001	Maize	extracellular	92.25	92.93
TraesCS6B01G144100.1	Wheat	cytosol	42.86	92.67
GSMUA_Achr7P19690_001	Banana	cytosol	78.93	92.35
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	92.25	92.25
KRH10048	Soybean	cytosol, endoplasmic reticulum	92.25	92.25
KRH47074	Soybean	nucleus	92.25	92.25
KRH23270	Soybean	cytosol	92.25	92.25
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	92.01	92.01
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	90.8	90.8
KRH44102	Soybean	nucleus	92.49	90.74
PGSC0003DMT400012518	Potato	cytosol	90.31	90.31
VIT_09s0002g01760.t01	Wine grape	cytosol	93.22	88.3
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	94.43	88.24
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	94.43	88.24
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	85.23	80.55
HORVU6Hr1G020910.1	Barley	cytosol	94.19	77.03
OQU76995	Sorghum	cytosol	93.7	74.85
TraesCS6B01G144000.1	Wheat	golgi	94.43	70.78
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	37.53	67.69
GSMUA_Achr9P23810_001	Banana	cytosol	60.05	63.92
GSMUA_Achr3P27120_001	Banana	cytosol	44.31	54.95
GSMUA_Achr9P13950_001	Banana	mitochondrion	36.08	48.53
GSMUA_Achr8P05380_001	Banana	cytosol	36.8	32.83
GSMUA_Achr5P12220_001	Banana	cytosol	37.77	31.71
GSMUA_Achr2P10560_001	Banana	cytosol	37.29	31.69
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	37.53	31.5
GSMUA_Achr10P...	Banana	nucleus	34.38	29.46
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	34.62	28.71
GSMUA_Achr6P14220_001	Banana	cytosol	34.38	27.15
GSMUA_Achr11P...	Banana	cytosol	36.56	26.73
GSMUA_Achr6P27990_001	Banana	plastid	23.73	20.21
GSMUA_Achr1P01890_001	Banana	plastid	24.94	19.47

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G01750_001
EnsemblPlants:GSMUA_Achr6P01750_001	EnsemblPlants:GSMUA_Achr6T01750_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0T3C3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002951816	:

Description

Eukaryotic initiation factor 4A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01750_001]

Coordinates

chr6:+:1135413..1138125

Molecular Weight (calculated)

46991.6 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.244

Length

413 amino acids

Sequence
(BLAST)

001: MAGMAPEGSQ FDARQYDAKM TELLTADGQE FFTSYDEICE SFDDMGLHEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLVQCQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILQSGVH VVVGTPGRVF DMLRRQSLRP DYIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIRQFYVNV EKEEWKLDTL CDLYEALTIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLVTTDLLA RGIDVQQVSM VINYDLPTQP ENYLHRIGRS GRFGRKGSAI NFVTRDDERM LFDIQRFYNV
401: VIEELPSNVA DLI

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.