Factsheet for TraesCS6B01G144000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

golgi: 23128297
golgi: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G320000.1	Wheat	cytosol	74.23	98.79
TraesCS6B01G144100.1	Wheat	cytosol	34.12	98.43
Os06t0701100-02	Rice	extracellular, nucleus, plastid	73.5	97.83
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	76.59	95.48
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	76.41	95.25
GSMUA_Achr8P24670_001	Banana	cytosol	64.79	94.95
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	71.14	94.92
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	70.78	94.43
VIT_11s0016g01920.t01	Wine grape	cytosol	70.78	94.43
KRH37426	Soybean	cytosol, endoplasmic reticulum	70.6	94.19
KRH12430	Soybean	cytosol	70.6	94.19
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	69.87	93.22
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	69.69	92.98
KRH23270	Soybean	cytosol	69.51	92.74
KRH10048	Soybean	cytosol, endoplasmic reticulum	69.51	92.74
KRH47074	Soybean	nucleus	69.33	92.49
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	68.97	92.01
GSMUA_Achr10P...	Banana	cytosol	63.88	91.91
PGSC0003DMT400012518	Potato	cytosol	68.6	91.53
GSMUA_Achr7P19690_001	Banana	cytosol	58.44	91.22
KRH44102	Soybean	nucleus	69.51	90.97
VIT_09s0002g01760.t01	Wine grape	cytosol	70.42	88.99
HORVU6Hr1G020910.1	Barley	cytosol	80.22	87.52
TraesCS2B01G584200.1	Wheat	mitochondrion	47.01	63.64
TraesCS6B01G472700.1	Wheat	nucleus	46.28	61.89
TraesCS6B01G217800.1	Wheat	cytosol	42.65	55.82
TraesCS3B01G224400.1	Wheat	cytosol	27.4	35.28
TraesCS1B01G477500.1	Wheat	cytosol	27.59	35.27
TraesCS2B01G387200.1	Wheat	cytosol	28.49	31.46
TraesCS6B01G265300.1	Wheat	cytosol	28.13	29.64
TraesCS1B01G189900.1	Wheat	cytosol	27.22	28.57
TraesCS4B01G274200.1	Wheat	cytosol	25.41	27.67
TraesCS5B01G534600.1	Wheat	cytosol	23.59	26.97
TraesCS3B01G592900.1	Wheat	plastid	18.69	22.99
TraesCS6B01G217700.1	Wheat	cytosol	44.83	18.5
TraesCS6B01G262800.1	Wheat	mitochondrion	20.15	18.47

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6B01G144000	EnsemblPlants:TraesCS6B01G144000.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:143513237..143517494

Molecular Weight (calculated)

61986.0 Da

IEP (calculated)

9.043

GRAVY (calculated)

-0.590

Length

551 amino acids

Sequence
(BLAST)

001: MKRAGRRGDG AQLNRPNQTQ SPREPSQRRK RNPTRLPQRD ETRDERERGR EGNESSRAPL PSGTNISRLS LSFSPQPTKP SLFPPQERAP SPLPTPPPPP
101: TNRSNPGPRS RIRSADQRAP APKPPDPPSS SPPRASAMAG MAPEGSQFDA KQYDSKMTEL LNQGDTGEFF TSYDEVHESF DDMGLQENLL RGIYAYGFEK
201: PSAIQQRGIV PFCKGLDVIQ QAQSGTGKTA TFCSGILQQL DYGLVECQAL VLAPTRELAQ QIEKVMRALG DYLGVKVHAC VGGTSVREDQ RILASGVHVV
301: VGTPGRVFDM LRRQSLRPDN IKMFVLDEAD EMLSRGFKDQ IYDIFQLLPS KIQVGVFSAT MPPEALEITR KFMNKPVRIL VKRDELTLEG IKQFYVNVEK
401: EEWKLDTLCD LYETLAITQS VIFVNTRRKV DWLTDKMRGR DHTVSATHGD MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NYDLPTQPEN
501: YLHRIGRSGR FGRKGVAINF VTREDERMLF DIQKFYNVVI EELPANVADL L

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.