Factsheet for TraesCS3B01G224400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G204400.1	Wheat	cytosol	99.77	99.77
TraesCS3A01G200100.1	Wheat	cytosol	99.3	97.48
KXG32708	Sorghum	cytosol	95.09	95.09
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	95.09	94.21
Os01t0549700-01	Rice	cytosol, plastid	94.86	93.98
TraesCS1B01G477500.1	Wheat	cytosol	91.59	90.95
VIT_09s0002g06660.t01	Wine grape	cytosol	89.95	89.95
Solyc06g066060.2.1	Tomato	nucleus	85.75	89.51
AT5G11170.1	Thale cress	cytosol	89.02	89.23
PGSC0003DMT400053566	Potato	cytosol	89.02	89.23
PGSC0003DMT400052757	Potato	cytosol	88.55	88.55
KRH44441	Soybean	cytosol, nucleus	87.38	87.79
KRH47464	Soybean	nucleus	87.38	87.79
KRH52452	Soybean	nucleus	87.38	87.59
KRH61783	Soybean	cytosol	87.15	87.35
Bra023311.1-P	Field mustard	cytosol	86.92	87.12
Bra023312.1-P	Field mustard	cytosol	87.15	85.55
CDY51112	Canola	cytosol	87.62	85.23
CDX85725	Canola	cytosol	87.85	85.07
CDX70383	Canola	cytosol	87.85	84.12
GSMUA_Achr8P05380_001	Banana	cytosol	90.65	83.8
VIT_04s0008g05330.t01	Wine grape	cytosol	88.55	82.93
Bra008984.1-P	Field mustard	cytosol	82.24	82.63
AT5G11200.2	Thale cress	cytosol	89.02	78.4
Solyc08g061000.2.1	Tomato	nucleus	88.78	78.35
CDY71952	Canola	cytosol	75.93	77.94
CDX69778	Canola	cytosol	88.32	76.36
CDX85726	Canola	cytosol	86.92	75.92
CDX78412	Canola	cytosol	88.08	75.86
Bra008983.1-P	Field mustard	cytosol	83.18	75.42
CDY51111	Canola	cytosol	42.06	72.29
CDX69777	Canola	cytosol, nucleus, plasma membrane	88.08	72.08
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	82.24	70.68
Zm00001d011149_P002	Maize	cytosol	26.17	67.47
Zm00001d011150_P005	Maize	cytosol	71.5	66.09
Bra006091.1-P	Field mustard	cytosol	80.61	65.84
CDY56825	Canola	cytosol	30.14	56.58
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.14	43.14
TraesCS6B01G144100.1	Wheat	cytosol	16.36	36.65
TraesCS7B01G320000.1	Wheat	cytosol	35.05	36.23
TraesCS2B01G584200.1	Wheat	mitochondrion	31.54	33.17
TraesCS6B01G472700.1	Wheat	nucleus	31.07	32.28
TraesCS2B01G387200.1	Wheat	cytosol	33.88	29.06
TraesCS6B01G217800.1	Wheat	cytosol	27.8	28.27
TraesCS6B01G144000.1	Wheat	golgi	35.28	27.4
TraesCS6B01G265300.1	Wheat	cytosol	33.41	27.34
TraesCS1B01G189900.1	Wheat	cytosol	33.41	27.24
TraesCS5B01G534600.1	Wheat	cytosol	28.04	24.9
TraesCS4B01G274200.1	Wheat	cytosol	27.8	23.52
TraesCS3B01G592900.1	Wheat	plastid	21.73	20.76
TraesCS6B01G262800.1	Wheat	mitochondrion	25.47	18.14
TraesCS6B01G217700.1	Wheat	cytosol	29.21	9.36

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G224400	EnsemblPlants:TraesCS3B01G224400.1	TIGR:cd00079	TIGR:cd00268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:302355686..302364964

Molecular Weight (calculated)

48291.2 Da

IEP (calculated)

5.476

GRAVY (calculated)

-0.216

Length

428 amino acids

Sequence
(BLAST)

001: MGEAKDAEVY EEDLVDYDEE VENAVDGAAA NPSVDVVKKG YVGIHSSGFR DFLLKPELLR AIQDCGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSTLQQID PVAGQVAALV LCHTRELAYQ ICNEFERFSK YLSETKVAVF YGGVHIKKHK DLLKNECPHI VVGTPGRILA LARDKDLSLK NVRHFILDEC
201: DKMLDSLDMR RDVQEIFKMT PHDKQVMMFS ATLSKEIRPV CKKFMQDPME IYVDDEAKLT LHGLVQHYIK LSEAEKNRKL NDLLDALDFN QIVIFVKSVG
301: RASELNRLLC ECNFPAICIH SGMTQEERLT RYKNFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVASASDSD
401: VLNQVQERFE VDIKELPEQI DTSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.