Factsheet for Bra008983.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023311.1-P	Field mustard	cytosol	83.9	92.74
AT5G11170.1	Thale cress	cytosol	83.69	92.51
Bra008984.1-P	Field mustard	cytosol	83.05	92.02
Bra023312.1-P	Field mustard	cytosol	83.47	90.37
PGSC0003DMT400052757	Potato	cytosol	78.81	86.92
PGSC0003DMT400053566	Potato	cytosol	78.6	86.89
VIT_09s0002g06660.t01	Wine grape	cytosol	78.18	86.22
Solyc06g066060.2.1	Tomato	nucleus	73.73	84.88
KXG32708	Sorghum	cytosol	76.27	84.11
KRH47464	Soybean	nucleus	75.64	83.8
KRH44441	Soybean	cytosol, nucleus	75.64	83.8
KXG22711	Sorghum	cytosol	76.06	83.68
TraesCS3B01G224400.1	Wheat	cytosol	75.42	83.18
TraesCS1B01G477500.1	Wheat	cytosol	75.85	83.06
TraesCS3D01G204400.1	Wheat	cytosol	75.21	82.94
TraesCS1A01G443400.1	Wheat	cytosol	75.85	82.49
TraesCS1D01G451300.1	Wheat	cytosol	73.73	82.27
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	75.21	82.18
Os01t0549700-01	Rice	cytosol, plastid	75.0	81.94
TraesCS3A01G200100.1	Wheat	cytosol	75.21	81.42
VIT_04s0008g05330.t01	Wine grape	cytosol	78.81	81.4
AT5G11200.2	Thale cress	cytosol	83.69	81.28
GSMUA_Achr8P05380_001	Banana	cytosol	77.97	79.48
CDX69777	Canola	cytosol, nucleus, plasma membrane	85.59	77.25
Solyc08g061000.2.1	Tomato	nucleus	78.6	76.49
HORVU1Hr1G095100.5	Barley	cytosol	75.42	75.91
Zm00001d009761_P004	Maize	cytosol	75.64	73.01
Bra006091.1-P	Field mustard	cytosol	78.39	70.61
Zm00001d011149_P002	Maize	cytosol	23.94	68.07
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	69.49	65.86
Zm00001d011150_P005	Maize	cytosol	56.57	57.67
Bra030892.1-P	Field mustard	cytosol	6.57	45.59
Bra027387.1-P	Field mustard	cytosol	29.87	34.22
Bra014365.1-P	Field mustard	cytosol	29.66	33.98
Bra021517.1-P	Field mustard	cytosol	29.66	33.98
Bra037977.1-P	Field mustard	cytosol	29.45	33.74
Bra030893.1-P	Field mustard	cytosol	29.45	33.74
Bra029124.1-P	Field mustard	cytosol	29.24	33.66
Bra001530.1-P	Field mustard	cytosol	29.66	33.65
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.24	32.32
Bra032127.1-P	Field mustard	cytosol	27.54	31.86
Bra008527.1-P	Field mustard	cytosol	22.25	31.82
Bra022449.1-P	Field mustard	cytosol	27.33	31.62
Bra038231.1-P	Field mustard	cytosol	27.33	31.62
Bra014267.1-P	Field mustard	cytosol	26.27	30.69
Bra003442.1-P	Field mustard	cytosol	29.24	28.93
Bra007587.1-P	Field mustard	cytosol	28.81	28.75
Bra037351.1-P	Field mustard	cytosol	29.66	27.45
Bra000965.1-P	Field mustard	cytosol	29.24	26.9
Bra039312.1-P	Field mustard	cytosol	29.03	26.5
Bra040687.1-P	Field mustard	cytosol	27.33	26.01
Bra028547.1-P	Field mustard	cytosol	26.91	25.87
Bra023712.1-P	Field mustard	plastid	19.28	19.04
Bra016037.1-P	Field mustard	cytosol	28.81	18.71

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra008983	EnsemblPlants:Bra008983.1	EnsemblPlants:Bra008983.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M4CXN6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002544300	SEG:seg	:	:	:

Description

AT5G11200 (E=1e-128) | DEAD/DEAH box helicase, putative

Coordinates

chrA10:-:14720928..14724104

Molecular Weight (calculated)

53359.2 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.190

Length

472 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALIL CHTRELAYQI CNEFVRFSTY LPDTRVSVFY GGVNNKIHKD LLKNECPHIV VGTPGRVLGL ARDKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDHYIK LSEMEKNRKL NDLLDALDFN QVVIFVKSVS RAGELNKLLI ECNFPSICIH
301: SGMSQEERLT HYKSFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVASASDSE VLNQVQDRFE VDIKELPEQI
401: DTSTYSKRLL SFFTSSSKQL KCLFLVLTSD SVSSYSFAQC RLKLASSLSK NFRLQQAAWS FAAIIISSEF VF

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.