Factsheet for Bra030892.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26130	Canola	cytosol	92.65	62.38
Bra030893.1-P	Field mustard	cytosol	97.06	16.02
Bra014365.1-P	Field mustard	cytosol	97.06	16.02
Bra027387.1-P	Field mustard	cytosol	95.59	15.78
Bra021517.1-P	Field mustard	cytosol	95.59	15.78
Bra001530.1-P	Field mustard	cytosol	95.59	15.62
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.65	14.75
Bra029124.1-P	Field mustard	cytosol	86.76	14.39
Bra037977.1-P	Field mustard	cytosol	86.76	14.32
Bra022449.1-P	Field mustard	cytosol	63.24	10.54
Bra038231.1-P	Field mustard	cytosol	63.24	10.54
Bra032127.1-P	Field mustard	cytosol	63.24	10.54
Bra014267.1-P	Field mustard	cytosol	55.88	9.41
Bra016037.1-P	Field mustard	cytosol	89.71	8.39
Bra008527.1-P	Field mustard	cytosol	38.24	7.88
Bra008984.1-P	Field mustard	cytosol	44.12	7.04
Bra023311.1-P	Field mustard	cytosol	44.12	7.03
Bra023312.1-P	Field mustard	cytosol	44.12	6.88
Bra008983.1-P	Field mustard	cytosol	45.59	6.57
Bra007587.1-P	Field mustard	cytosol	41.18	5.92
Bra006091.1-P	Field mustard	cytosol	44.12	5.73
Bra003442.1-P	Field mustard	cytosol	39.71	5.66
Bra028547.1-P	Field mustard	cytosol	38.24	5.3
Bra037351.1-P	Field mustard	cytosol	39.71	5.29
Bra000965.1-P	Field mustard	cytosol	39.71	5.26
Bra040687.1-P	Field mustard	cytosol	38.24	5.24
Bra039312.1-P	Field mustard	cytosol	38.24	5.03
Bra023712.1-P	Field mustard	plastid	32.35	4.6

Protein Annotations

EnsemblPlants:Bra030892.1	EnsemblPlants:Bra030892.1-P	EnsemblPlantsGene:Bra030892	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF294	PFAM:PF00271	PFscan:PS51194	SUPFAM:SSF52540
UniParc:UPI0002547250	UniProt:M4EQ21	MapMan:35.1	:	:	:

Description

AT3G13920 (E=2e-031) EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor

Coordinates

chrA08:-:591992..592198

Molecular Weight (calculated)

7932.7 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.143

Length

68 amino acids

Sequence
(BLAST)

1: MEMLMVINFD LPTQPENYLH RIGRSGRFGR KGVAINFVTK DDERMLFDIQ KFYNVVVEEL PSNVADLL

Best Arabidopsis Sequence Match ( AT3G13920.3 )
(BLAST)

001: MHVSLTRNSM KCELEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ LDFSLIQCQA
101: LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD QIYDIFQLLP
201: PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS RDHTVSATHG
301: DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV VEELPSNVAD
401: LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.