Factsheet for Bra007587.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48935	Canola	cytosol, plastid	94.71	94.32
CDX71756	Canola	cytosol	95.14	93.95
Bra003442.1-P	Field mustard	cytosol	94.29	93.5
AT3G61240.1	Thale cress	cytosol	94.71	89.96
KRH04755	Soybean	cytosol	47.99	85.66
Bra008527.1-P	Field mustard	cytosol	55.6	79.7
Bra039312.1-P	Field mustard	cytosol	86.68	79.3
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	56.87	79.12
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	79.92	78.75
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	79.7	76.63
VIT_15s0046g03200.t01	Wine grape	cytosol	79.49	76.58
GSMUA_Achr2P10560_001	Banana	cytosol	78.44	76.34
Solyc10g017530.2.1	Tomato	nucleus	78.86	75.97
KRH48173	Soybean	mitochondrion	79.07	74.8
KRH48170	Soybean	endoplasmic reticulum	79.49	74.75
KRH65096	Soybean	nucleus	78.86	74.75
Bra037351.1-P	Field mustard	cytosol	80.55	74.71
KRH65098	Soybean	endoplasmic reticulum, nucleus	79.28	74.7
GSMUA_Achr5P12220_001	Banana	cytosol	77.59	74.59
Solyc01g094350.2.1	Tomato	nucleus	78.22	74.3
Bra000965.1-P	Field mustard	cytosol	80.34	74.07
Os04t0533000-02	Rice	cytosol	77.8	73.9
TraesCS2B01G387200.1	Wheat	cytosol	77.8	73.75
TraesCS2A01G370200.2	Wheat	cytosol	78.01	73.65
Os02t0641800-02	Rice	plasma membrane, plastid	78.22	72.83
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	77.17	72.56
TraesCS2D01G366700.1	Wheat	cytosol	77.8	72.44
EER91410	Sorghum	cytosol	77.17	71.99
EER91411	Sorghum	cytosol	76.74	71.6
HORVU6Hr1G060630.1	Barley	cytosol	78.22	71.43
Os10t0503700-01	Rice	plasma membrane	78.22	71.02
TraesCS6A01G236800.1	Wheat	cytosol	78.01	70.55
Zm00001d051268_P004	Maize	extracellular	77.8	70.5
TraesCS6D01G219400.1	Wheat	cytosol	77.8	70.36
TraesCS6B01G265300.1	Wheat	cytosol	77.59	70.17
Zm00001d017384_P008	Maize	cytosol	77.8	70.1
TraesCS1A01G174600.1	Wheat	cytosol	76.53	68.95
KRH40488	Soybean	cytosol	78.44	68.83
TraesCS1B01G189900.1	Wheat	cytosol	76.32	68.76
TraesCS1D01G164500.1	Wheat	cytosol	76.32	68.63
GSMUA_Achr11P...	Banana	cytosol	78.65	65.84
HORVU1Hr1G046020.1	Barley	cytosol	76.32	64.01
Solyc05g048850.2.1	Tomato	mitochondrion	72.09	63.5
Bra030892.1-P	Field mustard	cytosol	5.92	41.18
Bra030893.1-P	Field mustard	cytosol	31.92	36.65
Bra027387.1-P	Field mustard	cytosol	31.71	36.41
Bra014365.1-P	Field mustard	cytosol	31.71	36.41
Bra021517.1-P	Field mustard	cytosol	31.71	36.41
Bra029124.1-P	Field mustard	cytosol	31.5	36.34
Bra001530.1-P	Field mustard	cytosol	31.92	36.3
Bra037977.1-P	Field mustard	cytosol	31.29	35.92
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.14	35.6
Bra022449.1-P	Field mustard	cytosol	29.81	34.56
Bra032127.1-P	Field mustard	cytosol	29.81	34.56
Bra038231.1-P	Field mustard	cytosol	29.81	34.56
Bra023311.1-P	Field mustard	cytosol	30.02	33.26
Bra014267.1-P	Field mustard	cytosol	27.7	32.43
Bra023312.1-P	Field mustard	cytosol	29.6	32.11
Bra008984.1-P	Field mustard	cytosol	28.75	31.92
Bra008983.1-P	Field mustard	cytosol	28.75	28.81
Bra040687.1-P	Field mustard	cytosol	28.12	26.81
Bra006091.1-P	Field mustard	cytosol	29.39	26.53
Bra028547.1-P	Field mustard	cytosol	27.27	26.27
Bra023712.1-P	Field mustard	plastid	21.78	21.55
Bra016037.1-P	Field mustard	cytosol	31.92	20.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra007587	EnsemblPlants:Bra007587.1	EnsemblPlants:Bra007587.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CTP3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002542948	SEG:seg

Description

AT3G61240 (E=6e-241) | DEAD/DEAH box helicase, putative (RH12)

Coordinates

chrA09:+:29907910..29910118

Molecular Weight (calculated)

53800.7 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.448

Length

473 amino acids

Sequence
(BLAST)

001: MNNSRGRYPP GRGRGAPPNP DHQTYQQQPQ RGQSQNHQQQ QWTRRAQLPG NANEVQKTTS SQPPVASSDS NGQDWKSTLR LPPPDTRYQT ADVTATKGNE
101: FEDYFLKRDL LKGIYEKGFE KPSPIQEESI PIALTGSDIL ARAKNGTGKT GAFCIPVLER IDPNTNVIQA MILVPTRELA LQTSQVCKEL SKYLNIHVMV
201: TTGGTSLRDD IMRLHQPVHL LVGTPGRILD LTKKGVCVLK DCTMLVMDEA DKLLSAEFQP SLEELIQFLP QNRQFLMYSA TFPVTVKAFK DRHLRKPYVI
301: NLMDQLTLMG VTQYYAFVEE RQKVHCLNTL FSKLQINQSI IFCNSVNRVE LLAKKITELG YSCFYIHAKM VQDHRNRVFH EFRNGACRNL VCTDLFTRGI
401: DIQAVNVVIN FDFPRTSESY LHRVGRSGRF GHLGLAVNLV TYEDRFKMYQ TEQELGTEIK PIPSNIDQAI YCQ

Best Arabidopsis Sequence Match ( AT3G61240.2 )
(BLAST)

001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ

Arabidopsis Description

RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.