Factsheet for HORVU1Hr1G046020.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G000880.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	HORVU3Hr1G000880.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G189900.1	Wheat	cytosol	91.13	97.9
TraesCS1D01G164500.1	Wheat	cytosol	90.96	97.53
TraesCS1A01G174600.1	Wheat	cytosol	90.78	97.52
Os10t0503700-01	Rice	plasma membrane	80.5	87.14
EER91410	Sorghum	cytosol	78.19	86.98
KRH04755	Soybean	cytosol	40.78	86.79
EER91411	Sorghum	cytosol	78.01	86.78
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	77.13	86.48
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	51.95	86.18
CDY54061	Canola	cytosol	48.94	84.66
CDY45702	Canola	cytosol	30.85	84.47
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	70.92	83.33
Solyc10g017530.2.1	Tomato	nucleus	71.99	82.69
Bra008527.1-P	Field mustard	cytosol	47.7	81.52
Solyc01g094350.2.1	Tomato	nucleus	70.74	80.12
HORVU6Hr1G060630.1	Barley	cytosol	73.23	79.73
KRH48170	Soybean	endoplasmic reticulum	71.1	79.72
KRH48173	Soybean	mitochondrion	70.21	79.2
KRH65096	Soybean	nucleus	69.68	78.76
KRH65098	Soybean	endoplasmic reticulum, nucleus	70.04	78.69
CDY07205	Canola	cytosol	68.26	78.41
CDY51147	Canola	cytosol	68.79	78.23
AT4G00660.1	Thale cress	cytosol, mitochondrion	69.86	78.02
CDX91901	Canola	cytosol	68.62	77.25
Bra037351.1-P	Field mustard	cytosol	69.5	76.86
Bra007587.1-P	Field mustard	cytosol	64.01	76.32
CDX74342	Canola	cytosol	69.5	76.26
Bra000965.1-P	Field mustard	cytosol	69.15	76.02
CDY48935	Canola	cytosol, plastid	63.83	75.79
Bra003442.1-P	Field mustard	cytosol	64.01	75.68
CDY58787	Canola	cytosol	64.54	75.52
CDX71756	Canola	cytosol	63.65	74.95
AT3G61240.1	Thale cress	cytosol	65.96	74.7
GSMUA_Achr11P...	Banana	cytosol	74.82	74.69
CDY37067	Canola	cytosol	65.96	72.94
CDY27357	Canola	cytosol, plastid	65.25	72.3
Bra039312.1-P	Field mustard	cytosol	65.96	71.95
AT2G45810.1	Thale cress	cytosol, plastid	66.84	71.4
Solyc05g048850.2.1	Tomato	mitochondrion	62.94	66.11
HORVU6Hr1G094560.1	Barley	cytosol	24.82	33.98
HORVU3Hr1G050890.1	Barley	cytosol	9.57	33.33
HORVU3Hr1G015500.1	Barley	cytosol	9.04	33.33
HORVU3Hr1G015460.1	Barley	cytosol	9.04	33.33
HORVU1Hr1G095100.5	Barley	cytosol	25.0	30.06
HORVU6Hr1G020910.1	Barley	cytosol	26.77	29.9
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	22.52	25.1
HORVU3Hr1G114220.3	Barley	plastid	17.55	20.0
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	21.81	19.22
HORVU6Hr1G059910.1	Barley	mitochondrion	19.33	18.14

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287FE18	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU1Hr1G046020	EnsemblPlants:HORVU1Hr1G046020.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF81995	UniParc:UPI000B47C595	SEG:seg

Description

No Description!

Coordinates

chrchr1H:-:336063172..336069313

Molecular Weight (calculated)

63387.6 Da

IEP (calculated)

8.627

GRAVY (calculated)

-0.550

Length

564 amino acids

Sequence
(BLAST)

001: SDPPRPKPKS ETHALRKGQT VGTLDPSRLV APSSKTLDPA MHHPRARYPP GYDYGGGGGG GRGGNGGGGG GGGGGNQNYY SGRNPHPQQH DYHHQQQQHA
101: PRNSFPQQQQ QHAQRNSFSQ QQQQQQQQQQ HQQWLRRDQA AAQSSGEGAA RTVARLDAVD TSSQDWKAQL NIPAPDTRFR TEDVTATKGN EFEDYFLKRE
201: LLMGIYEKGF ERPSPIQEES IPIALTGSDI LARAKNGTGK TAAFCIPALE KIDPEKNAIQ VVILVPTREL ALQTSQVCKE LGKYLNIEVM VSTGGTSLKD
301: DIMRLYQPVH LLAGTPGRIL DLTKKGICML NECSMLIMDE ADKLLAPEFQ PSVEQLIRYL PASRQLLLFS ATFPVTVKDF KQKYLPRPYV INLMDELTLK
401: GITQYYAFVE ERQKVHCLNT LFSKLQINQS IIFCNSVNRV ELLAKKITEL GYSCFYIHAK MLQDHRNRVF HDFRNGACRN LVCTDLFTRG IDIQAVNVVI
501: NFDFPKTAET YLHRVGRSGR FGHLGLAVNL ITYEDRFNMY RIEQELGTEI KTIPPQIDLA EYCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.