Factsheet for HORVU6Hr1G020910.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0701100-02	Rice	extracellular, nucleus, plastid	80.59	98.31
GSMUA_Achr8P24670_001	Banana	cytosol	70.5	94.68
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	77.43	94.67
VIT_11s0016g01920.t01	Wine grape	cytosol	77.23	94.43
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	77.03	94.19
KRH37426	Soybean	cytosol, endoplasmic reticulum	76.83	93.95
KRH12430	Soybean	cytosol	76.83	93.95
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	81.98	93.67
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	81.98	93.67
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	76.04	92.98
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	75.84	92.74
KRH23270	Soybean	cytosol	75.64	92.49
KRH10048	Soybean	cytosol, endoplasmic reticulum	75.64	92.49
KRH47074	Soybean	nucleus	75.45	92.25
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	75.05	91.77
GSMUA_Achr10P...	Banana	cytosol	69.5	91.64
PGSC0003DMT400012518	Potato	cytosol	74.65	91.28
GSMUA_Achr7P19690_001	Banana	cytosol	63.56	90.93
KRH44102	Soybean	nucleus	75.64	90.74
VIT_09s0002g01760.t01	Wine grape	cytosol	77.23	89.45
TraesCS6B01G144000.1	Wheat	golgi	87.52	80.22
HORVU6Hr1G094560.1	Barley	cytosol	51.09	62.62
HORVU3Hr1G015500.1	Barley	cytosol	16.04	52.94
HORVU3Hr1G015460.1	Barley	cytosol	16.04	52.94
HORVU3Hr1G050890.1	Barley	cytosol	16.24	50.62
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	46.14	36.41
HORVU1Hr1G095100.5	Barley	cytosol	29.7	31.98
HORVU6Hr1G060630.1	Barley	cytosol	30.89	30.12
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	27.72	27.67
HORVU1Hr1G046020.1	Barley	cytosol	29.9	26.77
HORVU3Hr1G114220.3	Barley	plastid	20.79	21.21
HORVU6Hr1G059910.1	Barley	mitochondrion	22.38	18.8

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	UniProt:A0A287TJ51	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0016787	EnsemblPlantsGene:HORVU6Hr1G020910
EnsemblPlants:HORVU6Hr1G020910.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B483A7D	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:61014054..61018527

Molecular Weight (calculated)

57052.2 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.427

Length

505 amino acids

Sequence
(BLAST)

001: ERRDARRERR ERVEPRAASV GDQYKPPFSL PTAHQTLALP TAGKSSSPPS PHRLHRRIDR IRDTISDSLG QSTRTSPPDR RSSSPTASAS AMAGMAPEGS
101: QFDAKHYDSK MTELLNQGDT EEFFTSYDEV HESFDDMGLQ ENLLRGIYAY GFEKPSAIQQ RGIVPFCKGL DVIQQAQSGT GKTATFCSGI LQQLDYGLVE
201: CQALVLAPTR ELAQQIEKVM RALGDYLGVK VHACVGGTSV REDQRILASG VHVVVGTPGR VFDMLRRQSL RPDNIKMFVL DEADEMLSRG FKDQIYDIFQ
301: LLPSKIQVGV FSATMPPEAL EITRKFMNKP VRILVKRDEL TLEGIKQFYV NVEKEEWKLD TLCDLYETLA ITQSVIFVNT RRKVDWLTDK MRGRDHTVSA
401: THGDMDQNTR DIIMREFRSG SSRVLITTDL LARGIDVQQV SLVINYDLPT QPENYLHRIG RSGRFGRKGV AINFVTREDE RMLFDIQKFY NVVIEELPAN
501: VADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.