Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44102 Soybean nucleus 99.52 97.62
KRH23270 Soybean cytosol 97.34 97.34
KRH10048 Soybean cytosol, endoplasmic reticulum 97.34 97.34
VIT_11s0016g01920.t01 Wine grape cytosol 94.43 94.43
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 93.7 93.7
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 93.46 93.46
GSMUA_Achr8P24670_001 Banana cytosol 84.99 93.35
GSMUA_Achr2P19480_001 Banana cytosol 83.54 93.24
KRH12430 Soybean cytosol 93.22 93.22
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 92.98 92.98
KRH37426 Soybean cytosol, endoplasmic reticulum 92.98 92.98
Solyc06g062800.2.1 Tomato cytosol, nucleus, unclear 92.98 92.98
Zm00001d015251_P001 Maize extracellular 92.25 92.93
EES04512 Sorghum cytosol 92.25 92.93
Zm00001d036480_P001 Maize plasma membrane, plastid 92.98 92.75
GSMUA_AchrUn_... Banana cytosol 83.05 92.7
Zm00001d014673_P001 Maize plastid 92.74 92.51
PGSC0003DMT400012518 Potato cytosol 92.49 92.49
KRH52210 Soybean cytosol, endoplasmic reticulum 92.25 92.25
GSMUA_Achr6P01750_001 Banana cytosol, plasma membrane 92.25 92.25
TraesCS6B01G144100.1 Wheat cytosol 42.62 92.15
Os02t0146600-01 Rice plastid 92.01 91.79
TraesCS7D01G412200.1 Wheat golgi, nucleus 92.01 91.79
TraesCS7A01G419400.1 Wheat cytosol 91.77 91.55
TraesCS7B01G320000.1 Wheat cytosol 91.77 91.55
Os06t0701100-02 Rice extracellular, nucleus, plastid 91.53 91.3
GSMUA_Achr10P... Banana cytosol 84.5 91.12
GSMUA_Achr7P19690_001 Banana cytosol 76.51 89.52
VIT_09s0002g01760.t01 Wine grape cytosol 92.98 88.07
TraesCS6D01G105000.1 Wheat endoplasmic reticulum, vacuole 92.49 86.43
TraesCS6A01G116200.1 Wheat endoplasmic reticulum, vacuole 92.49 86.43
GSMUA_Achr5P06410_001 Banana cytosol, mitochondrion 83.78 79.18
HORVU6Hr1G020910.1 Barley cytosol 92.25 75.45
OQU76995 Sorghum cytosol 92.49 73.89
TraesCS6B01G144000.1 Wheat golgi 92.49 69.33
KRH12197 Soybean nucleus 60.29 61.33
KRH37217 Soybean endoplasmic reticulum 60.05 60.93
KRH04755 Soybean cytosol 22.52 35.09
KRH47464 Soybean nucleus 35.84 34.74
KRH44441 Soybean cytosol, nucleus 35.84 34.74
KRH52452 Soybean nucleus 35.59 34.43
KRH61783 Soybean cytosol 35.59 34.43
KRH48173 Soybean mitochondrion 36.08 29.8
KRH65098 Soybean endoplasmic reticulum, nucleus 36.08 29.68
KRH65096 Soybean nucleus 35.84 29.66
KRH48170 Soybean endoplasmic reticulum 36.08 29.62
KRG99590 Soybean endoplasmic reticulum, nucleus 33.66 28.48
KRG93607 Soybean nucleus 33.41 27.88
KRH40488 Soybean cytosol 36.08 27.64
KRH02098 Soybean cytosol 12.35 22.17
KRH51049 Soybean plastid 24.7 21.61
KRH13813 Soybean nucleus 27.12 19.93
KRH43643 Soybean nucleus 27.12 19.93
Protein Annotations
EntrezGene:100809918MapMan:17.4.2.1Gene3D:3.40.50.300UniProt:A0A0R4J3M1EMBL:ACUP02004134InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_07G007400GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004386
GO:GO:0005488GO:GO:0005524GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650
InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH47074ProteinID:KRH47074ProteinID:KRH47074.1InterPro:P-loop_NTPase
PFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192PFscan:PS51194PFscan:PS51195
PANTHER:PTHR24031PANTHER:PTHR24031:SF365InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490
SUPFAM:SSF52540UniParc:UPI0001B3428E::::
Description
hypothetical protein
Coordinates
chr7:+:549904..553210
Molecular Weight (calculated)
46649.1 Da
IEP (calculated)
5.200
GRAVY (calculated)
-0.231
Length
413 amino acids
Sequence
(BLAST)
001: MAGLAPEGTQ FDGRQYDAKM SELLSTDGQE FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF ERPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLVQCQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILQAGVH TVVGTPGRVF DMLRRQSLRP DCIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SNDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVSI NFVTTDDARM LSDIQKFYNV
401: TVEELPSNVA DLL
Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.