CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0146600-01	Rice	plastid	97.07	96.14
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	95.37	94.67
VIT_11s0016g01920.t01	Wine grape	cytosol	94.88	94.19
KRH12430	Soybean	cytosol	94.63	93.95
KRH37426	Soybean	cytosol, endoplasmic reticulum	94.15	93.46
GSMUA_Achr8P24670_001	Banana	cytosol	85.61	93.35
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	93.9	93.22
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	93.66	92.98
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	93.41	92.74
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.17	92.49
KRH23270	Soybean	cytosol	93.17	92.49
KRH47074	Soybean	nucleus	92.93	92.25
GSMUA_Achr10P...	Banana	cytosol	85.85	91.91
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	92.2	91.53
PGSC0003DMT400012518	Potato	cytosol	91.71	91.04
GSMUA_Achr7P19690_001	Banana	cytosol	78.29	90.93
KRH44102	Soybean	nucleus	93.17	90.74
VIT_09s0002g01760.t01	Wine grape	cytosol	93.41	87.84
OQU76995	Sorghum	cytosol	97.32	77.18
EES07819	Sorghum	cytosol	63.41	63.88
KXG22711	Sorghum	cytosol	36.83	35.2
KXG32708	Sorghum	cytosol	35.85	34.35
EER91410	Sorghum	cytosol	36.83	29.78
EER91411	Sorghum	cytosol	36.59	29.59
OQU84655	Sorghum	cytosol	51.46	27.58
EER95473	Sorghum	cytosol	32.44	26.65
KXG29825	Sorghum	cytosol	49.76	23.13
KXG34209	Sorghum	plastid	24.39	22.57
OQU85369	Sorghum	mitochondrion, plastid	26.59	19.02

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	EntrezGene:8073375	EntrezGene:8073377	UniProt:C5XUM2	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EES04512	ProteinID:EES04512	ProteinID:EES04512.1	ProteinID:EES06269.2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006413	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:KXG29463.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3004G039400	SUPFAM:SSF52540	unigene:Sbi.18297	unigene:Sbi.8776	UniParc:UPI0001A85472	RefSeq:XP_002451536.1
RefSeq:XP_002453293.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3241745..3245988

Molecular Weight (calculated)

46640.2 Da

IEP (calculated)

5.225

GRAVY (calculated)

-0.249

Length

410 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDDKQYDKKM QEILTEDFFT SYDEVCESFD NMGLQENLLR GIYAYGFEKP SAIQQRGIVP FCKGLDVIQQ AQSGTGKTAT FCSGILQQLD
101: YGLVECQALV LAPTRELAQQ IEKVMRALGD YLGVKVHACV GGTSVREDQR ILASGVHVVV GTPGRVFDML RRQSLRPDNI KMFVLDEADE MLSRGFKDQI
201: YDIFQLLPSK IQVGVFSATM PPEALEITRK FMNKPVRILV KRDELTLEGI KQFYVNVEKE DWKLDTLCDL YETLAITQSV IFVNTRRKVD WLTDKMRSRD
301: HTVSATHGDM DQNTRDIIMR EFRSGSSRVL ITTDLLARGI DVQQVSLVIN YDLPTQPENY LHRIGRSGRF GRKGVAINFV TRDDERMLFD IQRFYNVTIE
401: ELPANVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.