CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12452

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72730.1	EES12452	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016350_P001	Maize	vacuole	36.73	55.75
KXG29825	Sorghum	cytosol	64.18	55.67
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	27.32	53.05
VIT_04s0008g00990.t01	Wine grape	cytosol	8.5	52.85
TraesCS6B01G217800.1	Wheat	cytosol	28.89	52.49
VIT_04s0008g00980.t01	Wine grape	cytosol	5.75	52.38
PGSC0003DMT400075339	Potato	cytosol	28.24	52.3
Solyc12g095990.1.1	Tomato	nucleus	28.24	52.3
KRH52210	Soybean	cytosol, endoplasmic reticulum	27.97	51.82
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.97	51.82
PGSC0003DMT400075336	Potato	cytosol	27.71	51.71
Bra021517.1-P	Field mustard	cytosol	27.84	51.7
Bra027387.1-P	Field mustard	cytosol	27.84	51.7
CDY39079	Canola	cytosol	27.84	51.7
CDY10607	Canola	cytosol	27.71	51.58
Solyc08g062800.2.1	Tomato	extracellular, plastid	27.84	51.57
PGSC0003DMT400021166	Potato	cytosol	27.84	51.57
EES04512	Sorghum	cytosol	27.58	51.46
CDY08220	Canola	cytosol	27.71	51.46
CDY02469	Canola	cytosol	27.71	51.46
Bra037977.1-P	Field mustard	cytosol	27.71	51.46
Bra030893.1-P	Field mustard	cytosol	27.71	51.46
CDY24057	Canola	cytosol	27.58	51.21
Bra014365.1-P	Field mustard	cytosol	27.58	51.21
Bra001530.1-P	Field mustard	cytosol	27.84	51.2
AT1G54270.1	Thale cress	cytosol	27.45	50.97
Solyc07g040750.1.1	Tomato	cytosol	27.45	50.85
CDY67069	Canola	cytosol	6.67	50.49
CDY33073	Canola	cytosol	27.19	50.49
Bra029124.1-P	Field mustard	cytosol	26.41	49.27
AT1G72730.1	Thale cress	cytosol	26.41	48.79
CDY32586	Canola	cytosol	24.05	48.68
AT3G13920.5	Thale cress	cytosol	26.54	48.45
CDY55205	Canola	cytosol	26.67	48.23
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.8	48.01
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.8	48.01
CDX97528	Canola	cytosol	26.67	48.0
CDY72259	Canola	cytosol	13.73	47.3
CDX82505	Canola	cytosol	26.41	47.2
CDX75739	Canola	cytosol	26.54	46.56
CDY11154	Canola	cytosol	11.63	44.06
OQU76995	Sorghum	cytosol	29.02	42.94
Os02t0221300-01	Rice	cytosol	49.28	42.79
EES07819	Sorghum	cytosol	22.61	42.51
TraesCS6A01G186600.1	Wheat	cytosol	30.46	42.36
CDY54037	Canola	cytosol	13.86	39.7
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	33.07	39.53
GSMUA_Achr9P13950_001	Banana	mitochondrion	15.42	38.44
CDY53867	Canola	cytosol	19.87	36.02
CDX72939	Canola	mitochondrion, nucleus	20.0	32.83
TraesCS6A01G186800.1	Wheat	cytosol	52.42	31.48
TraesCS6B01G217700.1	Wheat	cytosol	52.81	30.26
Bra016037.1-P	Field mustard	cytosol	28.76	30.26
TraesCS6D01G173700.3	Wheat	cytosol	52.29	29.76
KXG22711	Sorghum	cytosol	15.29	27.27
KXG32708	Sorghum	cytosol	15.03	26.87
EER91410	Sorghum	cytosol	16.34	24.65
EER91411	Sorghum	cytosol	16.34	24.65
CDY68148	Canola	nucleus	22.22	23.0
EER95473	Sorghum	cytosol	14.12	21.64
KXG34209	Sorghum	plastid	9.54	16.48
OQU85369	Sorghum	mitochondrion, plastid	11.76	15.71
CDY49860	Canola	cytosol	1.18	7.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8073773	UniProt:A0A1Z5RMG2	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4283
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:OQU84655	ProteinID:OQU84655	ProteinID:OQU84655.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF14111	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF534	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3004G095100	SUPFAM:SSF52540	UniParc:UPI0001A858AF	RefSeq:XP_002451790.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:8254896..8257738

Molecular Weight (calculated)

86140.8 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.382

Length

765 amino acids

Sequence
(BLAST)

001: MGLTEGMQLV SSRTEGHISS QVVESRGPEK KAMLEQELSV TPSDKGRCFA CHDTSHNLEQ CGIKYNHTTV PHQFGYATKY PFTMIQPSEE TVEKEKFNHH
101: CVLITSDLSN LDQGILKSEL QKFWKLSGDW ELRRECSKSF LASFSSEDDV ISCLNFPEME ALLDHKEVNL TVTRWQEGDE ESLDLIEEWV LVRGVRRIYR
201: NWKDLYQVAS AFGVLIDVDE KSLEAGDKEP IRLKIALRSL DGAPFSYYFA LGRSSRLVMV TVVQDKAEGM QQQNKESDKE HNKELNDAQS IFLEETECIE
301: ESRLAGEIKG NKISAPAATT ANTKKTTMDS SKPEEVQPVG RSSTSMIGEE HFEGKRKPPI KHVFKRRGKE QQVTETEDIH IYGSFSGMGL HENLLKGIYQ
401: YGLEKPSVVH QRGIVPFCNG QSVIHESLSG TTVTLCTGVL QRLDYRSAEC QALIIVPTRD LMYETEKVID ALGQFLGVKP YTCTGGTSFR VDQQTLSSRV
501: QVVIGTPGRI LDLLSRDALC KDHIRMLVLD EADELLTGGF KDQTCNIIQY LPAKIQIGLF SAAFSSEALE TSHWFMDKHV TVKVPRDEEL KDIGIKQFYH
601: KVEKEEKLGK LYVLFDTLTL ESTQIVIFAN TKQVVKTLIQ DIRGKGYTIS ASHGGMSQLG RDTAIQEFRA GSSRILIATD LRGTNLGQVP IVINYDLPTQ
701: LMQYISRVQQ QRRYSETESV AINFVTPADE RIVSDIQKFC NGQMSKLPSN PTFELLVGYD VQKCS

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.