Factsheet for GSMUA_Achr9P13950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 5
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P28040_001
GSMUA_Achr4P05970_001
GSMUA_Achr4P05990_001
GSMUA_Achr4P06000_001
GSMUA_Achr4P12750_001
GSMUA_Achr9P22750_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72730.1	GSMUA_Achr3P28040_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_Achr4P05970_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_Achr4P05990_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_Achr4P06000_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_Achr4P12750_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_Achr9P22750_001	AT5G57870.1	21798944
AT1G72730.1	GSMUA_AchrUn_...	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67069	Canola	cytosol	17.59	53.47
VIT_04s0008g00990.t01	Wine grape	cytosol	21.17	52.85
VIT_04s0008g00980.t01	Wine grape	cytosol	12.7	46.43
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	49.51	38.58
CDY72259	Canola	cytosol	27.69	38.29
PGSC0003DMT400075336	Potato	cytosol	49.84	37.32
PGSC0003DMT400021166	Potato	cytosol	50.16	37.29
Solyc08g062800.2.1	Tomato	extracellular, plastid	50.16	37.29
CDY11154	Canola	cytosol	24.43	37.13
PGSC0003DMT400075339	Potato	cytosol	49.84	37.05
Solyc12g095990.1.1	Tomato	nucleus	49.51	36.8
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.19	36.56
KRH52210	Soybean	cytosol, endoplasmic reticulum	48.86	36.32
AT1G54270.1	Thale cress	cytosol	48.53	36.16
CDY08220	Canola	cytosol	48.53	36.16
Bra014365.1-P	Field mustard	cytosol	48.53	36.16
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	48.53	36.08
Bra027387.1-P	Field mustard	cytosol	48.21	35.92
CDY39079	Canola	cytosol	48.21	35.92
Bra021517.1-P	Field mustard	cytosol	47.88	35.68
CDY10607	Canola	cytosol	47.56	35.52
AT1G72730.1	Thale cress	cytosol	47.88	35.51
CDY55205	Canola	cytosol	48.86	35.46
Bra030893.1-P	Field mustard	cytosol	47.56	35.44
CDY02469	Canola	cytosol	47.56	35.44
Bra001530.1-P	Field mustard	cytosol	47.88	35.34
AT3G13920.5	Thale cress	cytosol	48.21	35.32
CDY32586	Canola	cytosol	43.32	35.19
Solyc07g040750.1.1	Tomato	cytosol	47.23	35.11
GSMUA_Achr8P24670_001	Banana	cytosol	43.0	35.11
CDX97528	Canola	cytosol	48.53	35.06
CDY33073	Canola	cytosol	46.91	34.95
CDY24057	Canola	cytosol	46.91	34.95
Bra037977.1-P	Field mustard	cytosol	46.91	34.95
GSMUA_AchrUn_...	Banana	cytosol	42.02	34.86
GSMUA_Achr2P19480_001	Banana	cytosol	42.02	34.86
GSMUA_Achr7P19690_001	Banana	cytosol	40.07	34.84
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.21	34.66
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.21	34.66
Bra029124.1-P	Field mustard	cytosol	46.25	34.63
GSMUA_Achr10P...	Banana	cytosol	43.0	34.46
CDX82505	Canola	cytosol	47.56	34.11
CDY54037	Canola	cytosol	29.64	34.08
CDX75739	Canola	cytosol	47.56	33.49
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	23.78	31.88
CDY53867	Canola	cytosol	42.67	31.04
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	42.35	29.75
TraesCS6B01G217800.1	Wheat	cytosol	40.07	29.22
GSMUA_Achr9P23810_001	Banana	cytosol	36.16	28.61
CDX72939	Canola	mitochondrion, nucleus	43.0	28.33
GSMUA_Achr3P27120_001	Banana	cytosol	28.66	26.43
TraesCS6A01G186600.1	Wheat	cytosol	40.72	22.73
Bra016037.1-P	Field mustard	cytosol	49.19	20.77
GSMUA_Achr8P05380_001	Banana	cytosol	29.32	19.44
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	40.07	19.22
GSMUA_Achr2P10560_001	Banana	cytosol	28.66	18.11
GSMUA_Achr5P12220_001	Banana	cytosol	28.99	18.09
CDY68148	Canola	nucleus	43.32	18.0
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	28.34	17.68
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	28.01	17.27
GSMUA_Achr10P...	Banana	nucleus	25.73	16.39
OQU84655	Sorghum	cytosol	38.44	15.42
GSMUA_Achr11P...	Banana	cytosol	28.34	15.4
GSMUA_Achr6P14220_001	Banana	cytosol	25.73	15.11
Zm00001d016350_P001	Maize	vacuole	23.78	14.48
Os02t0221300-01	Rice	cytosol	38.76	13.51
Zm00001d016351_P002	Maize	nucleus	37.46	12.89
KXG29825	Sorghum	cytosol	35.83	12.47
GSMUA_Achr1P01890_001	Banana	plastid	19.22	11.15
GSMUA_Achr6P27990_001	Banana	plastid	17.59	11.13
TraesCS6A01G186800.1	Wheat	cytosol	41.69	10.05
TraesCS6D01G173700.3	Wheat	cytosol	42.35	9.67
TraesCS6B01G217700.1	Wheat	cytosol	41.37	9.51
CDY49860	Canola	cytosol	1.63	4.0

Protein Annotations

EnsemblPlants:GSMUA_Achr9P13950_001	EnsemblPlants:GSMUA_Achr9T13950_001	EnsemblPlantsGene:GSMUA_Achr9G13950_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	PFAM:PF00270	PFscan:PS51192	SMART:SM00487
SUPFAM:SSF52540	UniParc:UPI000294C478	UniProt:M0U053	MapMan:35.1	:	:

Description

Putative Eukaryotic initiation factor 4A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G13950_001]

Coordinates

chr9:-:9041350..9043204

Molecular Weight (calculated)

34148.3 Da

IEP (calculated)

9.515

GRAVY (calculated)

0.181

Length

307 amino acids

Sequence
(BLAST)

001: MLINLMRSQM SCISTWTRPS VLIMSGFKNP SAIQQRGIVS FCKELDVIQQ AQAGPGMTVA LCSGILQRLV YSFLECQALV LSPTRKGAQK IEKMLGALGC
101: YLGVKVYAAT GATSVCEHQQ DFSNGFHVIV GTPGCILDML LLLPSFLRMF GLGHADVMLD QVFDIFKRLP SRIQVGPFSA TTNVGLSLLQ CRKIQYKPVR
201: ILLKQDEHIG KHIKQFYVDV EEEMKLESLV NLHDASATTE SIIVFVTANT KLSLTDNIRT WLRTNGMRSC MNSNQVVLVF LSPPIINYDL PARARRSVCF
301: GRRKNAV

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.