Factsheet for Solyc12g095990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075339	Potato	cytosol	99.52	99.52
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	94.67	99.24
Solyc08g062800.2.1	Tomato	extracellular, plastid	98.55	98.55
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.88	95.88
KRH52210	Soybean	cytosol, endoplasmic reticulum	95.64	95.64
Bra027387.1-P	Field mustard	cytosol	94.19	94.42
CDY39079	Canola	cytosol	93.95	94.17
CDY08220	Canola	cytosol	93.95	94.17
Bra021517.1-P	Field mustard	cytosol	93.7	93.93
Bra014365.1-P	Field mustard	cytosol	93.7	93.93
Bra030893.1-P	Field mustard	cytosol	93.46	93.69
CDY02469	Canola	cytosol	93.46	93.69
CDY10607	Canola	cytosol	93.22	93.67
Bra001530.1-P	Field mustard	cytosol	94.19	93.51
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	93.46	93.46
AT1G54270.1	Thale cress	cytosol	92.98	93.2
Bra029124.1-P	Field mustard	cytosol	89.83	90.49
CDY32586	Canola	cytosol	82.81	90.48
Solyc07g040750.1.1	Tomato	cytosol	90.07	90.07
CDY24057	Canola	cytosol	89.83	90.05
Bra037977.1-P	Field mustard	cytosol	89.83	90.05
CDY33073	Canola	cytosol	89.35	89.56
CDY55205	Canola	cytosol	91.28	89.13
AT3G13920.5	Thale cress	cytosol	90.07	88.78
CDX97528	Canola	cytosol	91.28	88.71
CDX82505	Canola	cytosol	90.56	87.38
CDX75739	Canola	cytosol	90.8	86.01
CDY72259	Canola	cytosol	46.0	85.59
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	60.53	63.94
TraesCS6B01G217800.1	Wheat	cytosol	56.17	55.11
GSMUA_Achr9P13950_001	Banana	mitochondrion	36.8	49.51
TraesCS6A01G186600.1	Wheat	cytosol	58.11	43.64
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	56.66	36.56
Solyc06g066060.2.1	Tomato	nucleus	35.35	35.61
Solyc10g017530.2.1	Tomato	nucleus	36.8	30.96
Solyc08g061000.2.1	Tomato	nucleus	35.35	30.1
Solyc01g094350.2.1	Tomato	nucleus	36.08	29.92
Solyc05g048850.2.1	Tomato	mitochondrion	36.8	28.31
OQU84655	Sorghum	cytosol	52.3	28.24
Solyc10g085790.1.1	Tomato	nucleus	33.66	27.36
Solyc04g082790.2.1	Tomato	plastid	32.93	27.25
Os02t0221300-01	Rice	cytosol	56.66	26.56
Zm00001d016350_P001	Maize	vacuole	30.51	25.0
Zm00001d016351_P002	Maize	nucleus	49.88	23.09
KXG29825	Sorghum	cytosol	48.43	22.68
Solyc01g079800.2.1	Tomato	plastid	24.94	22.44
Solyc08g080550.1.1	Tomato	nucleus	26.63	20.07
TraesCS6A01G186800.1	Wheat	cytosol	59.32	19.23
TraesCS6D01G173700.3	Wheat	cytosol	59.56	18.3
TraesCS6B01G217700.1	Wheat	cytosol	58.11	17.98

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006413	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DH72	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc12g095990.1	EnsemblPlants:Solyc12g095990.1.1	UniParc:UPI0002769A15	:	:	:

Description

No Description!

Coordinates

chr12:-:65076203..65078338

Molecular Weight (calculated)

46846.4 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.232

Length

413 amino acids

Sequence
(BLAST)

001: MAGSAPEGSQ FDARQFDAKM TELLGTEQQD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGVLQ
101: QLDYSLVECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILQSGVH VVVGTPGRVF DMLRRQSLRP DHIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PPKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: GRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDERM LFDIQKFYNV
401: VIEELPANVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.