Factsheet for Bra001530.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030893.1-P	Field mustard	cytosol	97.6	98.54
Bra021517.1-P	Field mustard	cytosol	97.6	98.54
Bra027387.1-P	Field mustard	cytosol	97.12	98.06
Bra014365.1-P	Field mustard	cytosol	96.39	97.33
Bra030892.1-P	Field mustard	cytosol	15.62	95.59
PGSC0003DMT400075339	Potato	cytosol	93.99	94.67
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	89.66	94.67
PGSC0003DMT400021166	Potato	cytosol	93.51	94.19
Solyc08g062800.2.1	Tomato	extracellular, plastid	93.51	94.19
Solyc12g095990.1.1	Tomato	nucleus	93.51	94.19
PGSC0003DMT400075336	Potato	cytosol	92.79	94.15
Bra037977.1-P	Field mustard	cytosol	91.35	92.23
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.35	92.01
KRH52210	Soybean	cytosol, endoplasmic reticulum	91.11	91.77
Bra029124.1-P	Field mustard	cytosol	89.66	90.98
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.62	88.29
Bra022449.1-P	Field mustard	cytosol	60.1	61.27
Bra032127.1-P	Field mustard	cytosol	60.1	61.27
Bra038231.1-P	Field mustard	cytosol	60.1	61.27
Bra014267.1-P	Field mustard	cytosol	53.61	55.2
TraesCS6B01G217800.1	Wheat	cytosol	54.81	54.16
Bra016037.1-P	Field mustard	cytosol	90.14	51.58
GSMUA_Achr9P13950_001	Banana	mitochondrion	35.34	47.88
TraesCS6A01G186600.1	Wheat	cytosol	56.01	42.36
Bra008527.1-P	Field mustard	cytosol	30.05	37.88
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	54.57	35.47
Bra023311.1-P	Field mustard	cytosol	35.58	34.66
Bra023312.1-P	Field mustard	cytosol	35.34	33.72
Bra008984.1-P	Field mustard	cytosol	33.17	32.39
Bra007587.1-P	Field mustard	cytosol	36.3	31.92
Bra003442.1-P	Field mustard	cytosol	36.3	31.66
Bra037351.1-P	Field mustard	cytosol	36.54	29.8
Bra008983.1-P	Field mustard	cytosol	33.65	29.66
Bra000965.1-P	Field mustard	cytosol	35.82	29.04
Bra039312.1-P	Field mustard	cytosol	35.82	28.82
Bra040687.1-P	Field mustard	cytosol	33.41	28.02
Bra028547.1-P	Field mustard	cytosol	32.93	27.9
OQU84655	Sorghum	cytosol	51.2	27.84
Bra006091.1-P	Field mustard	cytosol	33.89	26.91
Os02t0221300-01	Rice	cytosol	55.29	26.11
Zm00001d016350_P001	Maize	vacuole	29.09	24.01
Bra023712.1-P	Field mustard	plastid	26.44	23.01
Zm00001d016351_P002	Maize	nucleus	47.84	22.31
KXG29825	Sorghum	cytosol	46.39	21.88
TraesCS6A01G186800.1	Wheat	cytosol	56.97	18.6
TraesCS6D01G173700.3	Wheat	cytosol	57.21	17.71
TraesCS6B01G217700.1	Wheat	cytosol	55.77	17.38

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra001530	EnsemblPlants:Bra001530.1	EnsemblPlants:Bra001530.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CBF0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002540902	:

Description

AT3G13920 (E=2e-232) EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor

Coordinates

chrA03:-:16878602..16880003

Molecular Weight (calculated)

47130.8 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.194

Length

416 amino acids

Sequence
(BLAST)

001: MYLVMAGSAP EGTQFDARQF DQKLNEVLEG QDEFFTSYDE VHDSFDAMGL QENLLRGIYA YGFEKPSAIQ QRGIVPFCQG LDVIQQAQSG TGKTATFCSG
101: VLQQLDFTLV QCQALVLAPT RELAQQIEKV MRALGDYLGV KVHACVGGTS VREDQRILQA GVHVVVGTPG RVFDMLKRQS LRADSIKMFV LDEADEMLSR
201: GFKDQIYDIF QLLPPKIQVG VFSATMPPEA LEITRKFMSK PVRILVKRDE LTLEGIKQFY VNVEKEDWKL ETLCDLYETL AITQSVIFVN TRRKVDWLTD
301: KMRGRDHTVS ATHGDMDQNT RDIIMREFRS GSSRVLITTD LLARGIDVQQ VSLVINYDLP TQPENYLHRI GRSGRFGRKG VAINFVTKDD ERMLFDIQKF
401: YNVVVEELPS NVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.