Factsheet for Bra006091.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023311.1-P	Field mustard	cytosol	73.66	90.4
AT5G11170.1	Thale cress	cytosol	72.9	89.46
Bra023312.1-P	Field mustard	cytosol	73.86	88.76
CDX70383	Canola	cytosol	75.57	88.59
Bra008984.1-P	Field mustard	cytosol	69.08	84.98
PGSC0003DMT400052757	Potato	cytosol	69.27	84.81
PGSC0003DMT400053566	Potato	cytosol	69.08	84.78
VIT_09s0002g06660.t01	Wine grape	cytosol	68.32	83.64
Solyc06g066060.2.1	Tomato	nucleus	64.69	82.68
KRH47464	Soybean	nucleus	66.6	81.92
KRH44441	Soybean	cytosol, nucleus	66.6	81.92
KXG32708	Sorghum	cytosol	66.41	81.31
TraesCS1B01G477500.1	Wheat	cytosol	66.79	81.21
KXG22711	Sorghum	cytosol	66.41	81.12
TraesCS1A01G443400.1	Wheat	cytosol	66.79	80.65
TraesCS3D01G204400.1	Wheat	cytosol	65.84	80.61
TraesCS3B01G224400.1	Wheat	cytosol	65.84	80.61
TraesCS1D01G451300.1	Wheat	cytosol	64.89	80.38
CDX78412	Canola	cytosol	75.95	80.08
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	65.65	79.63
Os01t0549700-01	Rice	cytosol, plastid	65.46	79.4
AT5G11200.2	Thale cress	cytosol	72.9	78.6
VIT_04s0008g05330.t01	Wine grape	cytosol	68.51	78.56
TraesCS3A01G200100.1	Wheat	cytosol	65.27	78.44
Bra008983.1-P	Field mustard	cytosol	70.61	78.39
GSMUA_Achr8P05380_001	Banana	cytosol	68.89	77.97
Solyc08g061000.2.1	Tomato	nucleus	69.08	74.64
HORVU1Hr1G095100.5	Barley	cytosol	65.46	73.13
Zm00001d009761_P004	Maize	cytosol	66.03	70.76
Zm00001d011149_P002	Maize	cytosol	20.42	64.46
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	61.26	64.46
Zm00001d011150_P005	Maize	cytosol	49.43	55.94
Bra030892.1-P	Field mustard	cytosol	5.73	44.12
Bra037977.1-P	Field mustard	cytosol	26.72	33.98
Bra021517.1-P	Field mustard	cytosol	26.72	33.98
Bra027387.1-P	Field mustard	cytosol	26.72	33.98
Bra030893.1-P	Field mustard	cytosol	26.72	33.98
Bra029124.1-P	Field mustard	cytosol	26.53	33.9
Bra001530.1-P	Field mustard	cytosol	26.91	33.89
Bra014365.1-P	Field mustard	cytosol	26.53	33.74
Bra008527.1-P	Field mustard	cytosol	20.99	33.33
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.34	32.32
Bra032127.1-P	Field mustard	cytosol	24.81	31.86
Bra022449.1-P	Field mustard	cytosol	24.62	31.62
Bra038231.1-P	Field mustard	cytosol	24.62	31.62
Bra014267.1-P	Field mustard	cytosol	22.9	29.7
Bra007587.1-P	Field mustard	cytosol	26.53	29.39
Bra003442.1-P	Field mustard	cytosol	26.72	29.35
Bra037351.1-P	Field mustard	cytosol	27.48	28.24
Bra000965.1-P	Field mustard	cytosol	27.1	27.68
Bra039312.1-P	Field mustard	cytosol	26.91	27.27
Bra040687.1-P	Field mustard	cytosol	24.05	25.4
Bra028547.1-P	Field mustard	cytosol	23.66	25.25
Bra016037.1-P	Field mustard	cytosol	26.14	18.84
Bra023712.1-P	Field mustard	plastid	16.98	18.62

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra006091	EnsemblPlants:Bra006091.1	EnsemblPlants:Bra006091.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CPF3
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000253F905	SEG:seg	:	:	:	:

Description

AT5G11200 (E=4e-097) | DEAD/DEAH box helicase, putative

Coordinates

chrA03:-:1951374..1954524

Molecular Weight (calculated)

58474.2 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.171

Length

524 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHRSGFRD FLLKPELLRA IVDSGFEHPS EGKYGGYILL INGSFGAIFF GSPSVQHECI
101: PQAILGMDVI CQAKSGMGKT AVFVLSTLQQ IEPTPGQVSA LILCHTRELA YQICNEFVRF STYLPDTKVS VFYGGVNNKI HKELLKNECP HIVVGTPGRV
201: LGLARDKDLS LKNVRHFILD ECDKMLESLG DFQDDSSRQI SYDVLSNAQQ RDTACLQEIY ARCNVPRPIL SRFTRSVVLN LLAREICHLI LGRAVLSRGV
301: VRSQGFIMIS FTSLIVPSNI DHRGFKPGGR GSQFGGLSSV LDSPMEIYVD DEAKLTLHGL VQHYIKLSER EKNRKLNDLL DALDFNQVVI FVKSVSRAGE
401: LNKLLIECNF PSICIHSGMS QEERLTHYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG TKGLAITFVA SASDSEVLNQ
501: VQDRFEVDIK ELPEQIDTST YMPS

Best Arabidopsis Sequence Match ( AT5G11200.2 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.