Factsheet for TraesCS1A01G443400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G477500.1	Wheat	cytosol	98.85	99.54
TraesCS1D01G451300.1	Wheat	cytosol	96.54	99.05
KXG22711	Sorghum	cytosol	94.47	95.57
VIT_09s0002g06660.t01	Wine grape	cytosol	90.09	91.36
PGSC0003DMT400053566	Potato	cytosol	89.86	91.33
PGSC0003DMT400052757	Potato	cytosol	88.48	89.72
AT5G11170.1	Thale cress	cytosol	88.25	89.7
Solyc06g066060.2.1	Tomato	nucleus	84.33	89.27
TraesCS3A01G200100.1	Wheat	cytosol	89.63	89.22
KRH61783	Soybean	cytosol	87.56	88.99
KRH52452	Soybean	nucleus	87.33	88.76
KRH47464	Soybean	nucleus	86.64	88.26
HORVU1Hr1G095100.5	Barley	cytosol	95.16	88.06
Bra023311.1-P	Field mustard	cytosol	86.64	88.06
KRH44441	Soybean	cytosol, nucleus	86.41	88.03
Bra023312.1-P	Field mustard	cytosol	86.18	85.78
CDX85725	Canola	cytosol	86.87	85.29
CDY51112	Canola	cytosol	86.18	85.0
CDX70383	Canola	cytosol	87.33	84.79
VIT_04s0008g05330.t01	Wine grape	cytosol	89.17	84.68
GSMUA_Achr8P05380_001	Banana	cytosol	90.32	84.67
Bra008984.1-P	Field mustard	cytosol	81.57	83.1
Zm00001d009761_P004	Maize	cytosol	93.55	83.03
Solyc08g061000.2.1	Tomato	nucleus	90.32	80.82
AT5G11200.2	Thale cress	cytosol	88.25	78.81
CDY71952	Canola	cytosol	74.42	77.46
CDX69778	Canola	cytosol	87.33	76.57
CDX85726	Canola	cytosol	86.41	76.53
CDX78412	Canola	cytosol	87.56	76.46
Bra008983.1-P	Field mustard	cytosol	82.49	75.85
CDY51111	Canola	cytosol	42.63	74.3
CDX69777	Canola	cytosol, nucleus, plasma membrane	87.33	72.47
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	82.03	71.49
Bra006091.1-P	Field mustard	cytosol	80.65	66.79
CDY56825	Canola	cytosol	29.72	56.58
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.41	44.15
TraesCS7A01G419400.1	Wheat	cytosol	34.79	36.47
TraesCS2A01G552800.1	Wheat	cytosol	29.95	35.23
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	35.02	34.39
TraesCS6A01G416700.1	Wheat	nucleus	31.11	32.69
TraesCS2A01G370200.2	Wheat	cytosol	33.87	29.34
TraesCS6A01G236800.1	Wheat	cytosol	33.64	27.92
TraesCS1A01G174600.1	Wheat	cytosol	33.18	27.43
TraesCS4A01G340500.1	Wheat	cytosol	27.42	24.9
TraesCS4A01G031800.1	Wheat	cytosol	28.11	24.02
TraesCS6A01G186600.1	Wheat	cytosol	28.57	22.55
TraesCS6A01G234000.1	Wheat	mitochondrion	25.58	18.47
TraesCS6A01G186800.1	Wheat	cytosol	29.72	10.13

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1A01G443400	EnsemblPlants:TraesCS1A01G443400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:591926186..591930017

Molecular Weight (calculated)

49066.0 Da

IEP (calculated)

5.480

GRAVY (calculated)

-0.293

Length

434 amino acids

Sequence
(BLAST)

001: MMGEAKENDV YEEELLDYEE DDDKALDASS NANAKPAADA SQPKKGYVGI HSSGFRDFLL KPELLRAIQD CGFEHPSEVQ HECIPQAILG MDVICQAKSG
101: MGKTAVFVLS SLQQIDPTAG QVAALVLCHT RELAYQICNE FERFSKFLPE LKVAVFYGGV HIKKHQDLLK NDCPHIVVGT PGRILALARD KDLSLKNVRH
201: FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPICKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLTES EKNRKLNDLL DALDFNQVVI
301: FVKSVSRAAE LNKLLCECNF PSICIHSGMT QEERLTRYKN FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG TKGLAITFVS
401: SASDSDVLNQ VQERFEVDIK ELPEQIDTST YMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.