Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G11170.1 | Thale cress | cytosol | 83.67 | 96.02 |
| CDY51112 | Canola | cytosol | 85.1 | 94.77 |
| CDX70383 | Canola | cytosol | 85.71 | 93.96 |
| CDX85725 | Canola | cytosol | 84.49 | 93.67 |
| PGSC0003DMT400052757 | Potato | cytosol | 79.39 | 90.89 |
| PGSC0003DMT400053566 | Potato | cytosol | 79.18 | 90.87 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 78.57 | 89.95 |
| Solyc06g066060.2.1 | Tomato | nucleus | 74.49 | 89.02 |
| KRH44441 | Soybean | cytosol, nucleus | 76.53 | 88.03 |
| KRH47464 | Soybean | nucleus | 76.53 | 88.03 |
| KXG22711 | Sorghum | cytosol | 76.53 | 87.41 |
| KXG32708 | Sorghum | cytosol | 76.33 | 87.38 |
| CDX78412 | Canola | cytosol | 88.57 | 87.32 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 76.12 | 87.15 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 76.53 | 87.01 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 75.92 | 86.92 |
| CDX69778 | Canola | cytosol | 87.76 | 86.87 |
| AT5G11200.2 | Thale cress | cytosol | 86.12 | 86.83 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 76.53 | 86.41 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 74.49 | 86.29 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 75.71 | 85.88 |
| Os01t0549700-01 | Rice | cytosol, plastid | 75.51 | 85.65 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 90.82 | 85.09 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 78.98 | 84.68 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 75.31 | 84.63 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 79.39 | 84.02 |
| CDY71952 | Canola | cytosol | 71.22 | 83.69 |
| CDY51111 | Canola | cytosol | 42.45 | 83.53 |
| Solyc08g061000.2.1 | Tomato | nucleus | 79.18 | 80.0 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 75.31 | 78.68 |
| Zm00001d009761_P004 | Maize | cytosol | 77.96 | 78.12 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 71.43 | 70.28 |
| Zm00001d011149_P002 | Maize | cytosol | 21.63 | 63.86 |
| Zm00001d011150_P005 | Maize | cytosol | 59.59 | 63.07 |
| CDY56825 | Canola | cytosol | 27.96 | 60.09 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.35 | 44.82 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.16 | 43.48 |
| CDY26130 | Canola | cytosol | 8.57 | 41.58 |
| CDY67069 | Canola | cytosol | 7.96 | 38.61 |
| CDY45702 | Canola | cytosol | 15.51 | 36.89 |
| CDY39079 | Canola | cytosol | 30.41 | 36.16 |
| CDY54061 | Canola | cytosol | 23.88 | 35.89 |
| CDY33073 | Canola | cytosol | 30.0 | 35.68 |
| CDY24057 | Canola | cytosol | 30.0 | 35.68 |
| CDY32586 | Canola | cytosol | 27.35 | 35.45 |
| CDY08220 | Canola | cytosol | 29.8 | 35.44 |
| CDY02469 | Canola | cytosol | 29.8 | 35.44 |
| CDY10607 | Canola | cytosol | 29.59 | 35.28 |
| CDY72259 | Canola | cytosol | 15.92 | 35.14 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.59 | 33.96 |
| CDX97528 | Canola | cytosol | 29.18 | 33.65 |
| CDY55205 | Canola | cytosol | 28.98 | 33.57 |
| CDY22577 | Canola | cytosol | 10.2 | 33.56 |
| CDY22956 | Canola | cytosol | 27.76 | 33.33 |
| CDX82280 | Canola | cytosol | 27.76 | 33.33 |
| CDX82505 | Canola | cytosol | 28.98 | 33.18 |
| CDY24617 | Canola | cytosol | 27.55 | 33.09 |
| CDY33416 | Canola | cytosol | 27.55 | 33.09 |
| CDY42205 | Canola | cytosol | 27.55 | 33.09 |
| CDY51692 | Canola | cytosol | 27.55 | 33.09 |
| CDX75739 | Canola | cytosol | 29.18 | 32.8 |
| CDY58940 | Canola | cytosol | 26.33 | 31.93 |
| CDY03623 | Canola | cytosol | 26.12 | 31.68 |
| CDY07205 | Canola | cytosol | 30.0 | 29.94 |
| CDY48935 | Canola | cytosol, plastid | 28.98 | 29.89 |
| CDY11154 | Canola | cytosol | 12.24 | 29.7 |
| CDX71756 | Canola | cytosol | 28.98 | 29.65 |
| CDY51147 | Canola | cytosol | 30.0 | 29.64 |
| CDY58787 | Canola | cytosol | 28.98 | 29.46 |
| CDX91901 | Canola | cytosol | 29.8 | 29.14 |
| CDX74342 | Canola | cytosol | 29.59 | 28.21 |
| CDY54037 | Canola | cytosol | 15.31 | 28.09 |
| CDY37067 | Canola | cytosol | 29.18 | 28.04 |
| CDY27357 | Canola | cytosol, plastid | 28.98 | 27.9 |
| CDX67556 | Canola | cytosol | 25.71 | 26.69 |
| CDY53867 | Canola | cytosol | 22.86 | 26.54 |
| CDX95397 | Canola | cytosol | 26.73 | 26.52 |
| CDX76225 | Canola | cytosol | 26.73 | 26.41 |
| CDY13319 | Canola | cytosol | 26.12 | 26.12 |
| CDX72939 | Canola | mitochondrion, nucleus | 22.65 | 23.82 |
| CDY47205 | Canola | plastid | 18.78 | 19.25 |
| CDY02574 | Canola | plastid | 18.78 | 19.25 |
| CDY68148 | Canola | nucleus | 22.86 | 15.16 |
| CDY49860 | Canola | cytosol | 2.04 | 8.0 |
Protein Annotations
| MapMan:16.11.1.3 | Gene3D:3.40.50.300 | GO:A0A078D8Z2 | EnsemblPlants:CDX85726 | ProteinID:CDX85726 | ProteinID:CDX85726.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00143474001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EF2CA7 | SEG:seg | : | : | : |
Description
BnaA02g00870D
Coordinates
chrLK031842:+:1437460..1440734
Molecular Weight (calculated)
55834.4 Da
IEP (calculated)
5.708
GRAVY (calculated)
-0.146
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVRDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKCFSLHFL AFLQHECIPQ AILGMDVICQ
101: AKSGMGKTAV FVLSTLQQIE PAPGQVSALI LCHTRELAYQ ICNEFVRFST YLPDTKVSVF YGGVNNKIHK DLLKNECPHI VVGTPGRVLG LARDKDLSLK
201: NVRHFILDEC DKMLESLDMR RDVQEIFKMT PHEKQVMMFS ATLSKEIRPV CKKFMQDVMS PCHYYLAIQV MYDVFTQWDL FSSFFCPSWA LIFRAIYDVS
301: WHILEDANLP MEIYVDDEAK LTLHGLVQHY IKLGEMEKNR KLNDLLDALD FNQVVIFVKS VSRARELNKL LIECNFPSIC IHSGMSQEER LTHYKSFKEG
401: HKRILVATDL VGRGIDIERV NIVINYDMPD SADTYLHRVG RAGRFGTKGL AITFVASASD SEVLNQVQAR FEVDIKQLPE NIDTSTYMPS
101: AKSGMGKTAV FVLSTLQQIE PAPGQVSALI LCHTRELAYQ ICNEFVRFST YLPDTKVSVF YGGVNNKIHK DLLKNECPHI VVGTPGRVLG LARDKDLSLK
201: NVRHFILDEC DKMLESLDMR RDVQEIFKMT PHEKQVMMFS ATLSKEIRPV CKKFMQDVMS PCHYYLAIQV MYDVFTQWDL FSSFFCPSWA LIFRAIYDVS
301: WHILEDANLP MEIYVDDEAK LTLHGLVQHY IKLGEMEKNR KLNDLLDALD FNQVVIFVKS VSRARELNKL LIECNFPSIC IHSGMSQEER LTHYKSFKEG
401: HKRILVATDL VGRGIDIERV NIVINYDMPD SADTYLHRVG RAGRFGTKGL AITFVASASD SEVLNQVQAR FEVDIKQLPE NIDTSTYMPS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.