Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037977.1-P | Field mustard | cytosol | 98.79 | 98.79 |
| CDY24057 | Canola | cytosol | 98.54 | 98.54 |
| CDY10607 | Canola | cytosol | 92.96 | 93.19 |
| CDY26130 | Canola | cytosol | 22.82 | 93.07 |
| CDY08220 | Canola | cytosol | 92.96 | 92.96 |
| CDY02469 | Canola | cytosol | 92.96 | 92.96 |
| AT1G54270.1 | Thale cress | cytosol | 91.99 | 91.99 |
| CDY37498 | Canola | cytosol, mitochondrion | 20.39 | 91.3 |
| CDY39079 | Canola | cytosol | 91.02 | 91.02 |
| CDY32586 | Canola | cytosol | 82.52 | 89.95 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 85.92 | 89.85 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 89.81 | 89.59 |
| PGSC0003DMT400075339 | Potato | cytosol | 89.81 | 89.59 |
| PGSC0003DMT400021166 | Potato | cytosol | 89.81 | 89.59 |
| Solyc12g095990.1.1 | Tomato | nucleus | 89.56 | 89.35 |
| PGSC0003DMT400075336 | Potato | cytosol | 88.59 | 89.02 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 88.83 | 88.62 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 88.35 | 88.14 |
| CDY55205 | Canola | cytosol | 88.83 | 86.52 |
| CDY72259 | Canola | cytosol | 46.36 | 86.04 |
| CDX82505 | Canola | cytosol | 89.08 | 85.75 |
| CDX97528 | Canola | cytosol | 88.35 | 85.65 |
| CDY67069 | Canola | cytosol | 20.87 | 85.15 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 87.86 | 84.78 |
| CDX75739 | Canola | cytosol | 89.32 | 84.4 |
| CDY11154 | Canola | cytosol | 37.38 | 76.24 |
| CDY54037 | Canola | cytosol | 41.02 | 63.3 |
| CDY53867 | Canola | cytosol | 63.35 | 61.85 |
| CDY24617 | Canola | cytosol | 58.25 | 58.82 |
| CDX82280 | Canola | cytosol | 58.25 | 58.82 |
| CDY33416 | Canola | cytosol | 58.25 | 58.82 |
| CDY42205 | Canola | cytosol | 58.25 | 58.82 |
| CDY51692 | Canola | cytosol | 58.25 | 58.82 |
| CDY22956 | Canola | cytosol | 58.01 | 58.58 |
| CDY22577 | Canola | cytosol | 20.15 | 55.7 |
| CDX72939 | Canola | mitochondrion, nucleus | 62.14 | 54.94 |
| CDY58940 | Canola | cytosol | 52.91 | 53.96 |
| CDY03623 | Canola | cytosol | 52.67 | 53.71 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 52.43 | 51.31 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 34.95 | 46.91 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 53.64 | 40.18 |
| CDY54061 | Canola | cytosol | 30.83 | 38.96 |
| CDY45702 | Canola | cytosol | 18.69 | 37.38 |
| CDY68148 | Canola | nucleus | 62.86 | 35.05 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 52.43 | 33.75 |
| CDX85725 | Canola | cytosol | 36.16 | 33.71 |
| CDY51112 | Canola | cytosol | 35.92 | 33.64 |
| CDX70383 | Canola | cytosol | 36.16 | 33.33 |
| CDY71952 | Canola | cytosol | 33.25 | 32.85 |
| CDY48935 | Canola | cytosol, plastid | 35.68 | 30.95 |
| CDX71756 | Canola | cytosol | 35.44 | 30.48 |
| CDY07205 | Canola | cytosol | 36.16 | 30.35 |
| CDY58787 | Canola | cytosol | 35.44 | 30.29 |
| CDY51147 | Canola | cytosol | 36.16 | 30.04 |
| CDX85726 | Canola | cytosol | 35.68 | 30.0 |
| CDX78412 | Canola | cytosol | 36.16 | 29.98 |
| CDX69778 | Canola | cytosol | 35.92 | 29.9 |
| CDX91901 | Canola | cytosol | 35.68 | 29.34 |
| CDX67556 | Canola | cytosol | 32.77 | 28.6 |
| CDY27357 | Canola | cytosol, plastid | 35.19 | 28.49 |
| CDY37067 | Canola | cytosol | 35.19 | 28.43 |
| CDX74342 | Canola | cytosol | 35.44 | 28.4 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 35.92 | 28.3 |
| CDY51111 | Canola | cytosol | 16.99 | 28.11 |
| CDY13319 | Canola | cytosol | 33.01 | 27.76 |
| CDX95397 | Canola | cytosol | 32.77 | 27.33 |
| CDX76225 | Canola | cytosol | 32.77 | 27.22 |
| OQU84655 | Sorghum | cytosol | 50.49 | 27.19 |
| Os02t0221300-01 | Rice | cytosol | 52.91 | 24.74 |
| CDY56825 | Canola | cytosol | 13.59 | 24.56 |
| Zm00001d016350_P001 | Maize | vacuole | 28.64 | 23.41 |
| CDY02574 | Canola | plastid | 25.73 | 22.18 |
| CDY47205 | Canola | plastid | 25.49 | 21.97 |
| KXG29825 | Sorghum | cytosol | 45.87 | 21.43 |
| Zm00001d016351_P002 | Maize | nucleus | 46.36 | 21.41 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 15.05 | 20.74 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 54.85 | 17.74 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 55.1 | 16.89 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 53.88 | 16.63 |
| CDY49860 | Canola | cytosol | 3.88 | 12.8 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078H895 | UniProt:A0A078H895 | EnsemblPlants:CDY33073 | ProteinID:CDY33073 |
| ProteinID:CDY33073.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00053715001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EDEF9D | : | : | : | : | : |
Description
BnaC06g07060DBnaC06g07060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H895]
Coordinates
chrLK032305:-:284976..287622
Molecular Weight (calculated)
46683.1 Da
IEP (calculated)
5.213
GRAVY (calculated)
-0.248
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FNTRQFDQKL NEVLEGQNEF FTSYDEVHES FDAMGLQENL LRGVYAYGFE KPSAIQQRGI VPFCNGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LEITLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHT CVGGTSVVED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT KKFMSKPVRI LVKRDELTLE GIRQFYVNVE KEEYKLETLC DLYDTLNITQ GVIFVNTRRK VDWLTDQMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGTAIN FVTRDDERML TDIQKFYNVA
401: VEELPSKIDD LL
101: LEITLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHT CVGGTSVVED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT KKFMSKPVRI LVKRDELTLE GIRQFYVNVE KEEYKLETLC DLYDTLNITQ GVIFVNTRRK VDWLTDQMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGTAIN FVTRDDERML TDIQKFYNVA
401: VEELPSKIDD LL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGFEKPSAI QQRGIVPFCK GLDVIQQAQS GTGKTATFCS GVLQQLDYAL
101: LQCQALVLAP TRELAQQIEK VMRALGDYQG VKVHACVGGT SVREDQRILQ AGVHVVVGTP GRVFDMLRRQ SLRPDCIKMF VLDEADEMLS RGFKDQIYDI
201: FQLLPPKIQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVEKEDWK LETLCDLYET LAITQSVIFV NTRRKVDWLT DKMRSRDHTV
301: SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFVTLD DQRMLFDIQK FYNVVVEELP
401: SNVADLL
101: LQCQALVLAP TRELAQQIEK VMRALGDYQG VKVHACVGGT SVREDQRILQ AGVHVVVGTP GRVFDMLRRQ SLRPDCIKMF VLDEADEMLS RGFKDQIYDI
201: FQLLPPKIQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVEKEDWK LETLCDLYET LAITQSVIFV NTRRKVDWLT DKMRSRDHTV
301: SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFVTLD DQRMLFDIQK FYNVVVEELP
401: SNVADLL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.