Factsheet for Solyc12g096000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075336	Potato	cytosol	99.75	95.85
Solyc08g062800.2.1	Tomato	extracellular, plastid	99.49	94.92
Solyc12g095990.1.1	Tomato	nucleus	99.24	94.67
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.69	91.28
KRH52210	Soybean	cytosol, endoplasmic reticulum	95.18	90.8
CDY08220	Canola	cytosol	94.92	90.78
Bra014365.1-P	Field mustard	cytosol	94.67	90.53
Bra027387.1-P	Field mustard	cytosol	94.67	90.53
CDY39079	Canola	cytosol	94.42	90.29
Bra030893.1-P	Field mustard	cytosol	94.16	90.05
CDY02469	Canola	cytosol	94.16	90.05
Bra021517.1-P	Field mustard	cytosol	94.16	90.05
CDY10607	Canola	cytosol	93.91	90.02
AT1G54270.1	Thale cress	cytosol	93.91	89.81
Bra001530.1-P	Field mustard	cytosol	94.67	89.66
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	93.91	89.59
Bra029124.1-P	Field mustard	cytosol	90.1	86.59
Bra037977.1-P	Field mustard	cytosol	90.36	86.41
CDY32586	Canola	cytosol	82.74	86.24
CDY24057	Canola	cytosol	90.1	86.17
Solyc07g040750.1.1	Tomato	cytosol	90.1	85.96
CDY33073	Canola	cytosol	89.85	85.92
CDY55205	Canola	cytosol	91.12	84.87
AT3G13920.5	Thale cress	cytosol	89.85	84.49
CDX97528	Canola	cytosol	91.12	84.47
CDX82505	Canola	cytosol	90.36	83.18
CDX75739	Canola	cytosol	90.61	81.88
CDY72259	Canola	cytosol	43.65	77.48
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	63.2	63.68
TraesCS6B01G217800.1	Wheat	cytosol	58.88	55.11
GSMUA_Achr9P13950_001	Banana	mitochondrion	38.58	49.51
TraesCS6A01G186600.1	Wheat	cytosol	60.15	43.09
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	58.12	35.78
Solyc06g066060.2.1	Tomato	nucleus	36.8	35.37
Solyc10g017530.2.1	Tomato	nucleus	38.07	30.55
Solyc08g061000.2.1	Tomato	nucleus	36.8	29.9
Solyc01g094350.2.1	Tomato	nucleus	37.31	29.52
Solyc05g048850.2.1	Tomato	mitochondrion	38.07	27.93
OQU84655	Sorghum	cytosol	53.05	27.32
Solyc04g082790.2.1	Tomato	plastid	34.01	26.85
Solyc10g085790.1.1	Tomato	nucleus	34.01	26.38
Os02t0221300-01	Rice	cytosol	57.87	25.88
Zm00001d016350_P001	Maize	vacuole	30.96	24.21
Zm00001d016351_P002	Maize	nucleus	49.75	21.97
Solyc01g079800.2.1	Tomato	plastid	25.13	21.57
KXG29825	Sorghum	cytosol	48.22	21.54
Solyc08g080550.1.1	Tomato	nucleus	27.92	20.07
TraesCS6A01G186800.1	Wheat	cytosol	60.41	18.68
TraesCS6D01G173700.3	Wheat	cytosol	60.66	17.78
TraesCS6B01G217700.1	Wheat	cytosol	59.14	17.45

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006413	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DH73	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc12g096000.1	EnsemblPlants:Solyc12g096000.1.1	UniParc:UPI0002769A16	:	:	:

Description

No Description!

Coordinates

chr12:-:65084549..65087141

Molecular Weight (calculated)

44853.2 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.209

Length

394 amino acids

Sequence
(BLAST)

001: MTELLGTEQQ EFFTSYDEVH DSFDAMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL QQLDYSLVEC QALVLAPTRE
101: LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILQSGV HVVVGTPGRV FDMLRRQSLR PDHIKMFVLD EADEMLSRGF KDQIYDIFQL LPPKIQVGVF
201: SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM RGRDHTVSAT HGDMDQNTRD
301: IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTKDDER MLFDIQKFYN VVIEELPANV ADLL

Best Arabidopsis Sequence Match ( AT3G13920.3 )
(BLAST)

001: MHVSLTRNSM KCELEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ LDFSLIQCQA
101: LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD QIYDIFQLLP
201: PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS RDHTVSATHG
301: DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV VEELPSNVAD
401: LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.