Factsheet for Solyc05g048850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
endoplasmic reticulum 1
cytosol 1
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Solyc05g009980.2.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54061	Canola	cytosol	53.82	88.65
CDY45702	Canola	cytosol	32.96	85.92
Bra008527.1-P	Field mustard	cytosol	51.96	84.55
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	52.14	82.35
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	69.46	77.71
Solyc10g017530.2.1	Tomato	nucleus	70.95	77.6
VIT_15s0046g03200.t01	Wine grape	cytosol	70.58	77.19
GSMUA_Achr2P10560_001	Banana	cytosol	69.46	76.75
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	69.83	76.22
GSMUA_Achr5P12220_001	Banana	cytosol	68.9	75.2
Solyc01g094350.2.1	Tomato	nucleus	69.65	75.1
CDY07205	Canola	cytosol	68.53	74.95
Os04t0533000-02	Rice	cytosol	69.09	74.5
CDY51147	Canola	cytosol	68.53	74.19
CDX91901	Canola	cytosol	69.09	74.05
AT4G00660.1	Thale cress	cytosol, mitochondrion	69.46	73.86
TraesCS2B01G387200.1	Wheat	cytosol	68.53	73.75
TraesCS2A01G370200.2	Wheat	cytosol	67.97	72.85
Os02t0641800-02	Rice	plasma membrane, plastid	68.9	72.83
Bra037351.1-P	Field mustard	cytosol	68.72	72.35
Bra000965.1-P	Field mustard	cytosol	69.09	72.32
TraesCS2D01G366700.1	Wheat	cytosol	68.34	72.24
Zm00001d051268_P004	Maize	extracellular	70.2	72.22
CDX74342	Canola	cytosol	69.09	72.18
Bra007587.1-P	Field mustard	cytosol	63.5	72.09
HORVU6Hr1G060630.1	Barley	cytosol	69.46	72.01
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	67.41	71.97
Bra003442.1-P	Field mustard	cytosol	63.87	71.91
Zm00001d017384_P008	Maize	cytosol	69.83	71.43
EER91411	Sorghum	cytosol	67.41	71.4
EER91410	Sorghum	cytosol	67.41	71.4
CDY48935	Canola	cytosol, plastid	63.13	71.37
TraesCS6D01G219400.1	Wheat	cytosol	69.46	71.32
TraesCS6B01G265300.1	Wheat	cytosol	69.46	71.32
TraesCS6A01G236800.1	Wheat	cytosol	69.27	71.13
CDX71756	Canola	cytosol	63.31	70.98
CDY58787	Canola	cytosol	63.69	70.95
Os10t0503700-01	Rice	plasma membrane	68.72	70.83
KRH40488	Soybean	cytosol	69.65	69.39
AT3G61240.1	Thale cress	cytosol	64.25	69.28
CDY27357	Canola	cytosol, plastid	64.99	68.57
CDY37067	Canola	cytosol	64.99	68.43
Bra039312.1-P	Field mustard	cytosol	64.99	67.5
TraesCS1A01G174600.1	Wheat	cytosol	65.92	67.43
TraesCS1B01G189900.1	Wheat	cytosol	65.92	67.43
TraesCS1D01G164500.1	Wheat	cytosol	65.74	67.11
AT2G45810.1	Thale cress	cytosol, plastid	65.55	66.67
HORVU1Hr1G046020.1	Barley	cytosol	66.11	62.94
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	27.93	38.07
Solyc12g095990.1.1	Tomato	nucleus	28.31	36.8
Solyc07g040750.1.1	Tomato	cytosol	28.12	36.56
Solyc08g062800.2.1	Tomato	extracellular, plastid	27.93	36.32
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	27.93	36.32
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	26.26	36.06
Solyc06g066060.2.1	Tomato	nucleus	26.82	35.12
Solyc08g061000.2.1	Tomato	nucleus	26.82	29.69
Solyc04g082790.2.1	Tomato	plastid	24.39	26.25
Solyc10g085790.1.1	Tomato	nucleus	24.77	26.18
Solyc01g079800.2.1	Tomato	plastid	17.32	20.26
Solyc08g080550.1.1	Tomato	nucleus	18.62	18.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010494	GO:GO:0010501	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
GO:GO:0033962	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4C117	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g048850.2	EnsemblPlants:Solyc05g048850.2.1	UniParc:UPI0002766E75

Description

No Description!

Coordinates

chr5:-:59563381..59578750

Molecular Weight (calculated)

61078.6 Da

IEP (calculated)

8.559

GRAVY (calculated)

0.014

Length

537 amino acids

Sequence
(BLAST)

001: MCWQIFGRWA KETWRLSCER GDYLQVFVRL RWFAIFGCWA DAGELGICPV KVVNISSSFL STLLFPCLTT LSHSVDIWTR IEKQTKPAIY FISMGKTSKL
101: WVTPNHNLLA GSSTLVSLGR AVSNQNTHLQ FVNYYQVSAI SLYSLEPHPS LLTSKDVTAT KGNDFEDYFL KRELLMGIYE KGFERPSPIQ EESIPIVLTG
201: SDILARAKNG TGKTAAFCIP ALEKIDQDNN VIQVIILVPT RELALQTSQV CKELGKHLKI QVMVSTGGTS LKDDIMRLYQ PVHLLVGTPG RILDLARKGV
301: CVLKDCSMLV MDEADKMLSP EFLPSIEQLI RFLPASRQIL MFSATFPVTV KAFKDRYLQK PYVINLMDEL TLKGITQFYA FVEERQKLHC LNTLFSKLQI
401: NQSIIFCNSV NRVELLAKKI TELGYSCFYI HAKMLQDHRN RVFHDFRNGA CRNLVCTDLF TRGIDIQAVN VVINFDFPKN SETYLHRVGR SGRFGHLGLA
501: VNLITFEDRF NLYRIEQELG TEIKQIPPHI DQAVYCG

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.