Factsheet for Solyc01g079800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023224	Potato	nucleus	67.97	97.2
KRH02098	Soybean	cytosol	32.68	65.22
VIT_05s0020g02870.t01	Wine grape	extracellular	68.19	64.4
KRH51049	Soybean	plastid	62.53	60.81
CDY02574	Canola	plastid	62.96	60.46
CDY47205	Canola	plastid	62.53	60.04
Bra023712.1-P	Field mustard	plastid	62.09	59.62
KXG34209	Sorghum	plastid	57.52	59.59
GSMUA_Achr6P27990_001	Banana	plastid	62.53	59.18
AT5G19210.2	Thale cress	plastid	60.78	59.11
Zm00001d011790_P001	Maize	plastid	56.86	58.39
TraesCS3B01G592900.1	Wheat	plastid	55.56	56.92
TraesCS3D01G530600.1	Wheat	plastid	55.12	56.35
Os01t0970600-01	Rice	plastid	58.17	56.33
HORVU3Hr1G114220.3	Barley	plastid	55.12	51.11
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	21.57	25.32
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	21.57	25.13
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	22.44	24.94
Solyc12g095990.1.1	Tomato	nucleus	22.44	24.94
Solyc08g062800.2.1	Tomato	extracellular, plastid	22.22	24.7
Solyc07g040750.1.1	Tomato	cytosol	21.35	23.73
Solyc08g080550.1.1	Tomato	nucleus	25.49	21.35
Solyc06g066060.2.1	Tomato	nucleus	18.74	20.98
Solyc10g017530.2.1	Tomato	nucleus	21.79	20.37
Solyc01g094350.2.1	Tomato	nucleus	21.13	19.48
Solyc08g061000.2.1	Tomato	nucleus	18.74	17.73
Solyc05g048850.2.1	Tomato	mitochondrion	20.26	17.32
Solyc04g082790.2.1	Tomato	plastid	18.08	16.63
Solyc10g085790.1.1	Tomato	nucleus	18.08	16.34

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4AXM5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g079800.2	EnsemblPlants:Solyc01g079800.2.1	UniParc:UPI0002761F3C	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G19210) UniProtKB/Swiss-Prot;Acc:Q3E9C3]

Coordinates

chr1:-:78927574..78933353

Molecular Weight (calculated)

51322.2 Da

IEP (calculated)

8.538

GRAVY (calculated)

-0.092

Length

459 amino acids

Sequence
(BLAST)

001: MAHFSATQLH TLSWTSSINP NVAYRTPKLL LYPKPSRASF SSSNVETTTL TKDSSTTTLR ELCYGHVQEH VILRAEEIGY VMPTKVQLQA LPFLFSGRDC
101: VLHAQTGSGK TLAYLLQVLS VVDSQRSAVQ ALIVVPTREL GMQVTKVARM LAANPSEHES GLKSCTVMAL LDGGMLKRHK SWLKAEPPTI VVATIGSLCQ
201: MLEKHILKLD TCQVLVVDEV DFMFNSSKEV SSLKRLLTSY SSSKNRQTIF ASASIPQHRR FLYDCMQQKW TRADVVHVHV NSVEPMPSCL HHRFVVCNRM
301: EKNPMLLSLL QTDSPESAII FVSEQSEKSK KAGSAPPTTL LVDFLKSSCG RFSDISLLEE DMNFNQRAAS LSELRGGGGY LLVATDIAAR GVDLPETTHI
401: YNFDIPKDAV NYLHRAGRTG RKPFSDKKCF VTSIITVEER FVLKRFENEL MFCCEQLFF

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.