Factsheet for Os01t0970600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34209	Sorghum	plastid	81.43	87.13
TraesCS3B01G592900.1	Wheat	plastid	79.32	83.93
TraesCS3D01G530600.1	Wheat	plastid	79.32	83.74
Zm00001d011790_P001	Maize	plastid	77.22	81.88
HORVU3Hr1G114220.3	Barley	plastid	80.38	76.97
PGSC0003DMT400023224	Potato	nucleus	42.19	62.31
KRH02098	Soybean	cytosol	30.17	62.17
GSMUA_Achr6P27990_001	Banana	plastid	62.66	61.24
CDY02574	Canola	plastid	59.7	59.2
CDY47205	Canola	plastid	59.49	59.0
Bra023712.1-P	Field mustard	plastid	59.28	58.79
KRH51049	Soybean	plastid	58.44	58.69
VIT_05s0020g02870.t01	Wine grape	extracellular	59.7	58.23
Solyc01g079800.2.1	Tomato	plastid	56.33	58.17
AT5G19210.2	Thale cress	plastid	57.81	58.05
Os02t0146600-01	Rice	plastid	21.1	24.15
Os06t0701100-02	Rice	extracellular, nucleus, plastid	21.1	24.15
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	18.78	22.03
Os01t0639100-01	Rice	nucleus	18.57	21.78
Os01t0549700-01	Rice	cytosol, plastid	19.62	21.53
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	19.41	21.3
Os03t0219700-01	Rice	plastid	24.89	20.59
Os02t0636300-01	Rice	nucleus	24.89	20.59
Os04t0533000-02	Rice	cytosol	20.46	19.48
Os02t0641800-02	Rice	plasma membrane, plastid	20.68	19.29
Os10t0503700-01	Rice	plasma membrane	20.89	19.0
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	17.72	16.63
Os02t0221300-01	Rice	cytosol	16.67	8.97

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0VDB4	ProteinID:BAS76421.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0970600	EnsemblPlants:Os01t0970600-01	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0003939A15
SEG:seg	:	:	:	:	:

Description

RNA helicase 58Similar to ATP binding protein. (Os01t0970600-01)

Coordinates

chr1:-:42821254..42825043

Molecular Weight (calculated)

52117.4 Da

IEP (calculated)

9.806

GRAVY (calculated)

-0.043

Length

474 amino acids

Sequence
(BLAST)

001: AATSTPRLRP PPPCPRPPPP PPPPPPRAPA AAAASSMAAF SGCASPLSTT LRSGLAPFTL RHRLRLRRLR ASAATLREVC AGRVPEHVLQ RAEEVGYVVP
101: TEVQEQSLPV LLSGQDCILH AQTGSGKTLA YLLSVFSAID FGRSSVQALV VVPTRELGMQ VTKVARILAA KACTVMALLD GGMLRRQKSW VKAEPPAIIV
201: ATVASLCQMI EKRAFSLQSM RVLVIDEVDF IFGSSKQVSS LRKILTSYSA ASSRQTIFAS ASIPQHNRFV HDCVQHKWTK TDVVHVHVNP VQPMPSHLQH
301: KYAICSKKER LHVLLSLLEK DAPKSGIIFV AEQSEKSKKA GHPPSTTVVV EFLRTTYMGS LEVLLLEEDM NFNARATSFT EVKGKGFLLV STDIASRGFD
401: LPQTSHIYNF DLPKTAIDYL HRAGRTGREP FSKLACSVTT LITEDEHFVL QRFQNELKFH CEELPVESMF AFNL

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.